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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGGCAGGATCAACAGAAAACAAAGTTAGTCAATAGAGGTCGCATTGATGGAGTGACCTCCCAACTAACCCAAAAGTTGGATCCCATAGACTGGCTTACgtaagaaatcttatccctaatctttacctacgtcatatattatcttttactattttggctgctctatcgtcttgttgtcactctgattctagtattttgaatatcaaaaaag

Basic information

species Arabidopsis thaliana
transcript AT5G16300.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G16300.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA10G34570.1 (Glycine max), 5'ss of exon 4
GAAGGCAGGATCAACAGAAAACAAAGTTAGTCAATAGAGGTCGCATTGATGGAGTGACCTCCCAACTAACCCAAAAGTTGGATCCCATAGACTGGCTTACgtaagaaatcttatccctaatctttacctacgtcatatattatcttttactattttggctgctctatcgtcttgttgtcactctgattctagtat-tttgaatatcaaaaaag
  | ||| || |||      ||||| | || || |||||  ||     ||  | ||      |  ||  | || ||  |||||||||||||||||||||||||||   ||| || | |    |  |  |   || | |||| |  |     || | |   |  |    |   || | ||  ||      | |  | | | | ||| | |    
AGAAGCATGACCAAAGTTTGACAAACTCAGCCATTAGAGAACGTTCAAATCAATTGTTAAATCGTCTTTCTCAGAAACTGGATCCCATAGACTGGCTTACgtaag---tctcattcttccggtcaagttgt-tcctttattgttgt-----atgtggaaggaacacaggatgtgctatccatcaacagatggcttgtgtaattattaca----

upper sequence: AT5G16300.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA20G32980.1 (Glycine max), 5'ss of exon 4
GAAGGCAGGATCAACAGAAAACAAAGTTAGTCAATAGAGGTCGCATTGATGGAGTGACCTCCCAACTAACCCAAAAGTTGGATCCCATAGACTGGCTTACgtaagaaatcttatccctaatctttacctacgtcatatattatcttttactattttggctgctctatcgtcttgttgtcactctgattctagtattttgaatatcaaaaaag
| | |||||| |||      ||||  | || || |||||  ||     ||  | ||      |  ||  | || ||  |||||||||||||||||||||||||||   ||| || | |           | ||  |   || | ||||| ||| | |   |  |    |   ||   ||  ||      | |  | |  |||    |||   
GGAAGCAGGACCAAAGTTTGACAACCTCAGCCATTAGAGAACGTTCAAATCAATTGTTAAATCGTCTTTCTCAGAAACTGGATCCCATAGACTGGCTTACgtaag---tctcattctt-----ccgatcaagttgttcctt-tgttttagtatgtggtaggaacacaagatgtgcaatccatcaacagttggcttatgtaatgattaaa---

upper sequence: AT5G16300.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv00s0340g00080.t01 (Vitis vinifera), 5'ss of exon 3
GAAGGCAGGATCAACAGAAAACAAAGTTAGTCAATAGAGGTCGCATTGATGGAGTGACCTCCCAACTAACCCAAAAGTTGGATCCCATAGACTGGCTTACgtaagaaatcttatccctaatctttacctacgtcatatattatcttttactattttggctgctctatcgtcttgttgtcactctgattctagtattttgaatatcaaaaaag
| | ||||||| || |  | || |||| | ||| |||||  ||  |||||||  ||      |   |  | ||||   |||||||||||||||||||||||||||   | ||||   || |||| |   |     |  | |   ||| |   | ||   |  | | |  | || ||   |||    |||  || |||| ||  |        
GGAAGCAGGATAAAAAACAGACCAAGTCAATCATTAGAGAGCGAGTTGATGGGTTGGTAAATCGTTTTTCACAAAGAATGGATCCCATAGACTGGCTTACgtaagttcttttatgagtattcttcattaaaagtttgaagt---tttgaaagtcttattttatttttatttttatttatact---gttcctgtgtttttaaatttg------