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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGTATAAGGGTCTTGCTCCACTCTGGGGACGTCAGATTCCTTgtaagttctggcctctattttgcaacctgttgcacaatctttttttttttttttttttgtttattgatgaaacatatgtagttctttaaaagcaaaaggtggtgatgatatctatgaattttacag

Basic information

species Arabidopsis thaliana
transcript AT5G14040.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G14040.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv14s0068g01260.t01 (Vitis vinifera), 5'ss of exon 3
CTTGTATAAGGGTCTTGCTCCACTCTGGGGACGTCAGATTCCTTgtaagttctggcctctattttgcaacctgttgcacaatctttttttttttttttttttgtttattgatgaaacatatgtagttctttaaaagcaaaaggtggtgatgatatctatgaattttacag
 ||||| |||||  ||| ||| |||||||||||||||||||| ||||||||  ||| |||           ||||     ||  || | |||| ||||||| || |||||   ||  ||||  | |     |           || | |||||  ||             
ATTGTACAAGGGCATTGTTCCTCTCTGGGGACGTCAGATTCCATgtaagttgaggcatct-----------tgttaagttat--ttatcttttatttttttggtctattgcataagaatattcattaaccaatgtagtgtgcttgctcatgatgact-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164094607|gb|ES101038.1|ES101038
EST:     CTTGTATAAGGGTCTTGCTCCACTCGTGGGGACGTCAGATTCCTT                         ACACTATGATGAAGTTT
genomic: CTTGTATAAGGGTCTTGCTCCACTC-TGGGGACGTCAGATTCCTTgtaagttctg ... aattttacagACACTATGATGAAGTTT
EST: gi|47831554|gb|CK121238.1|CK121238
EST:     CTTGTATAAGGGTCTTGCTCCACTCTGGGGACGTCAGATTCCTT                         ACACTATGATGAAGTTTGCTTCCTTTGAGACCATTGTTGAGATGATTTACA
genomic: CTTGTATAAGGGTCTTGCTCCACTCTGGGGACGTCAGATTCCTTgtaagttctg ... aattttacagACACTATGATGAAGTTTGCTTCCTTTGAGACCATTGTTGAGATGATTTACA
EST: gi|116450593|gb|EG493185.1|EG493185
EST:     CTTGTATAAGGGTCTTGCTCCACTCTGGGGACGTCAGATTCCTT                         ACACTATGATGAAGTTTGCTTCCTTTGAGACCATTGTTGAGATGATTTACA
genomic: CTTGTATAAGGGTCTTGCTCCACTCTGGGGACGTCAGATTCCTTgtaagttctg ... aattttacagACACTATGATGAAGTTTGCTTCCTTTGAGACCATTGTTGAGATGATTTACA
EST: gi|116407737|gb|EG450329.1|EG450329
EST:     CTTGTATAAGGGTCTTGCTCCACTCTGGGGACGTCAGATTCCTT                         ACACTATGATGAAGTTTGCTTCCTTTGAGAC-ATTGTTGAGATGATTTACA
genomic: CTTGTATAAGGGTCTTGCTCCACTCTGGGGACGTCAGATTCCTTgtaagttctg ... aattttacagACACTATGATGAAGTTTGCTTCCTTTGAGACCATTGTTGAGATGATTTACA
EST: gi|164111226|gb|ES195379.1|ES195379
EST:     GTCAGA-TCCTT                         ACACTATGATGAAGTTTGCTTCCTTTGAGACCATTGTTGAGATGATTTACA
genomic: GTCAGATTCCTTgtaagttctg ... aattttacagACACTATGATGAAGTTTGCTTCCTTTGAGACCATTGTTGAGATGATTTACA
EST: gi|124859158|gb|EH943595.1|EH943595
EST:     CTTGTATAAGGGTCTTGCTCCACTCTGGGGACGTCAGATTCCTT                         ACACTATGATGAAGTTTGCTTCCTTTGAG
genomic: CTTGTATAAGGGTCTTGCTCCACTCTGGGGACGTCAGATTCCTTgtaagttctg ... aattttacagACACTATGATGAAGTTTGCTTCCTTTGAG
EST: gi|47829559|gb|CK119243.1|CK119243
EST:     CTTGTATAAGGGTCTTGCTCCCACTCTGGG-ACGTCAGATTCCTT                         ACACTATGATGAAGNTTGCTTCCTTTGAGACCATTGNTGAGATGATTTACA
genomic: CTTGTATAAGGGTCTTGCTCC-ACTCTGGGGACGTCAGATTCCTTgtaagttctg ... aattttacagACACTATGATGAAGTTTGCTTCCTTTGAGACCATTGTTGAGATGATTTACA
EST: gi|124969172|gb|EL043093.1|EL043093
EST:     CTTGTATAAGGGTCTTGCTCCACTCTGGGGACGTCAGATTCCTT                         ACACTATGATGAAGTTTGCTT
genomic: CTTGTATAAGGGTCTTGCTCCACTCTGGGGACGTCAGATTCCTTgtaagttctg ... aattttacagACACTATGATGAAGTTTGCTT
EST: gi|47827833|gb|CK117517.1|CK117517
EST:     CTTGTATAAGGGTCTTGCTCCACTCTGGGGACGTCAGATTCCTT                         ACACTATGATGAAGTTTGCTTCCTTTGAGACCATTGTTGAGATGATTTACA
genomic: CTTGTATAAGGGTCTTGCTCCACTCTGGGGACGTCAGATTCCTTgtaagttctg ... aattttacagACACTATGATGAAGTTTGCTTCCTTTGAGACCATTGTTGAGATGATTTACA