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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGTTACTCACATTGATGATATCTTTAAAGACTTCACTTCTTACAAGTGTCGAGTTCCAGTCACTGGGGCAATTATCCTGGATGAGACATATGAAAGGgtaagaaccctgtggggtgatatttaggtttacttattagttaatgcttaccctttttgtttcattgtcattttcag

Basic information

species Arabidopsis thaliana
transcript AT5G13570.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G13570.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA16G27200.1 (Glycine max), 5'ss of exon 3
TTATGTTACTCACATTGATGATATCTTTAAAGACTTCACTTCTTACAAGTGTCGAGTTCCAGTCACTGGGGCAATTATCCTGGATGAGACATATGAAAGGgtaaga--------accctgtggggtgatatttaggtttacttattagt--taatgcttaccctttttgtttcattgtcattttcag-------------
||||||  | || || |||||||| || || ||||||||||| || |||  ||||||||| || ||||||||||| || || ||||| ||||||||||||||||||        | |   |   |   || |||  |||   | |  ||  |||  |  | |  |||  || | ||||  |||                 
TTATGTGGCCCATATAGATGATATTTTCAAGGACTTCACTTCCTATAAGGTTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGGgtaagacaagaattaacactttcagcagtacttattttttgctttctgtagtaagacaaatctatttgcttaccttgttttttgtgatgtttagttactg

upper sequence: AT5G13570.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA02G08170.1 (Glycine max), 5'ss of exon 3
TTATGTTACTCACATTGATGATATCTTTAAAGACTTCACTTCTTACAAGTGTCGAGTTCCAGTCACTGGGGCAATTATCCTGGATGAGACATATGAAAGGgtaaga--------accctgtggggtgatatttaggtttacttattagt--taatgcttaccctttttgtttcattgtcattttcag-------------
||||||  | || || |||||||| || || ||||||||||| || |||  ||||||||| || ||||||||||| || || ||||| ||||||||||||||||||        | |   |   |   || |||  |||   | |  ||  |||  |  | |  |||  |||| ||||  | ||  |             
TTATGTGGCCCATATAGATGATATTTTCAAGGACTTCACTTCCTATAAGGTTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGGgtaagacaagaataaacactttcagcagtacttattttttgctttctgtagtaagacaaatctatttgctttccttgttttcttgtggtatatctatgtt

upper sequence: AT5G13570.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv13s0019g04310.t01 (Vitis vinifera), 5'ss of exon 3
TTATGTTACTCACATTGATGATATCTTTAAAGACTTCACTTCTTACAAGTGTCGAGTTCCAGTCACTGGGGCAATTATCCTGGATGAGACATATGAAAGGgtaagaaccctgtggggtgatatttaggt-----ttact---tattagttaatgctt----------accctttttgtttcattgtcatttt-cag----
||||||| ||||||| |||||||| ||||| ||||||||||| ||||||  |||||| || || ||||||||||| ||  ||||||| || | |||| |||| || || ||      ||| |  ||||      ||| |   | || ||   | |||          | || ||||||  |||| || |||  ||     
TTATGTTGCTCACATAGATGATATTTTTAAGGACTTCACTTCCTACAAGGTTCGAGTACCTGTAACTGGGGCAATCATTTTGGATGAAACCTTTGAACGGgtgaggactcttgtcaatgaaagctagggaaagattattctattttggtcctttcttggagagaaaaatcccttttgtagcattttcttttaacaaccaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124913465|gb|EH987339.1|EH987339
EST:     GTCGAGTTCCAGTCACTGGGGCAATTATCCTGGATGAGACATATGAAAGG                         TGCCTGTTGGTGAAGGGATGGAAAGGATCGAGCTGGAGCTTT
genomic: GTCGAGTTCCAGTCACTGGGGCAATTATCCTGGATGAGACATATGAAAGGgtaagaaccc ... tcattttcagTGCCTGTTGGTGAAGGGATGGAAAGGATCGAGCTGGAGCTTT
EST: gi|125306996|gb|EL321081.1|EL321081
EST:     GTCGAGTTCCAGTCACTGGGGCAATTATCCTGGATGAGACATATGAAAGG                         TGCCTGTTGGTGAAGGG
genomic: GTCGAGTTCCAGTCACTGGGGCAATTATCCTGGATGAGACATATGAAAGGgtaagaaccc ... tcattttcagTGCCTGTTGGTGAAGGG