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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGGGATGAAGTCACTGTCCTCGATGCTACTGGAAAGTTTGTCATGCCAGgttaatcaattcatactagttgatactttccaaaattttagccttttgttttgaatccttaactagtttcagttctaattaagaatggttagcattttcatcttactcttgtccctgatgtaaatag

Basic information

species Arabidopsis thaliana
transcript AT5G12200.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G12200.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA08G18920.1 (Glycine max), 5'ss of exon 3
GTTGGGGATGAAGTCACTGTCCTCGATGCTACTGGAAAGTTTGTCATGCCAGgttaa---tcaattcatactagttgatactttccaaaattttagccttttgttttgaatccttaacta-gtttcagttctaattaagaatggttagcattttcatcttactcttgtccctgatgtaaatag
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GTTGGAGATGAGGTGACTGTCATAGATGCCACTGGCAAGTTTGTCATGCCAGgttaccccttaatcttttcaatctaacattcaccacaagttaa--tgtctacactaaattaaagaagatgaatcaggtcctgcta-gaatgaatgtcgtagat----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125075273|gb|EL138901.1|EL138901
EST:     TGGGGATGAAGTCACTGTCCTCGATGCTACTGGAAAGTTTGTCATGCCAG                         GAGGAATTGACCCC-ACACGCACCTCGCCATGGAATTTATGGGTACCG
genomic: TGGGGATGAAGTCACTGTCCTCGATGCTACTGGAAAGTTTGTCATGCCAGgttaatcaat ... atgtaaatagGAGGAATTGACCCCCACACGCACCTCGCCATGGAATTTATGGGTACCG
EST: gi|164084840|gb|ES064491.1|ES064491
EST:     TGCTACTGGAAAGTTTGTCATGCCAG                         GAGGAATTGACCCCCACACGCACCTCGCCATGGAATTTATGGGTACCGAGA
genomic: TGCTACTGGAAAGTTTGTCATGCCAGgttaatcaat ... atgtaaatagGAGGAATTGACCCCCACACGCACCTCGCCATGGAATTTATGGGTACCGAGA
EST: gi|124709876|gb|EH801278.1|EH801278
EST:     TGGGGATGAAGTCACTGTCCTCGATGCTACTGGAAAGTTTGTCATGCCAG                         GAGGAATTGACCCC-ACACGCACCTCGCCAT
genomic: TGGGGATGAAGTCACTGTCCTCGATGCTACTGGAAAGTTTGTCATGCCAGgttaatcaat ... atgtaaatagGAGGAATTGACCCCCACACGCACCTCGCCAT