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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCATTCCCAAAGCTTTGATGCCAATTGAGgtatgtatcttcttctagaagctcatttgtccaggaagtagtaaacttggctggagttttgaagtttgtctaatgatgaatcatgtgtctgcgagttatt...

Basic information

species Arabidopsis thaliana
transcript AT5G11950.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125211916|gb|EL226870.1|EL226870
EST:     AATCATTCCCAAAGCTTTGATGCCAATTGAG                         ATATCTGGTGAGACTGTGGGAGATGTAAGA
genomic: AATCATTCCCAAAGCTTTGATGCCAATTGAGgtatgtatct ... gtcgcatcagATATCTGGTGAGACTGTGGGAGATGTAAGA
EST: gi|125317571|gb|EL331656.1|EL331656
EST:     TGTACTTGGAATCATTCCCAAAGCTTTGATGCCAATTGAG                         ATATCTGGTGAGACTGTGGGAGATGTAAGAGTTGTTGCAGACATGCAT
genomic: TGTACTTGGAATCATTCCCAAAGCTTTGATGCCAATTGAGgtatgtatct ... gtcgcatcagATATCTGGTGAGACTGTGGGAGATGTAAGAGTTGTTGCAGACATGCAT
EST: gi|125136641|gb|EL176671.1|EL176671
EST:     AATCATTCCCAAAGCTTTGATGCCAATTGAG                         ATATCTGGTGAGACTGTGGGAGATGTAAGAGTTGTTGCAGACATGCATGAG
genomic: AATCATTCCCAAAGCTTTGATGCCAATTGAGgtatgtatct ... gtcgcatcagATATCTGGTGAGACTGTGGGAGATGTAAGAGTTGTTGCAGACATGCATGAG
EST: gi|19874754|gb|AU235585.1|AU235585
EST:     AATCATTCCCAAAGCTTTGATGCCAATTGAG                         ATATCTGGTGAGACTGTGGGAGATGTAAGAGTTGTTGCAGACATGCATGAG
genomic: AATCATTCCCAAAGCTTTGATGCCAATTGAGgtatgtatct ... gtcgcatcagATATCTGGTGAGACTGTGGGAGATGTAAGAGTTGTTGCAGACATGCATGAG