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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCTGATAGGATTAATCTCCCATGTATGCTGGTAAAAGGCAGTTACTACACTGGAACTGATGATGGGGCTGTGAACTTGATTAAACTAGATGACAAAAGgtattctttgattgtttgcattctagattcctgatattaggctcagtttgtatgtgatggtagtgatttttgcagagtcctaattcgttcttcacatgcag

Basic information

species Arabidopsis thaliana
transcript AT5G11850.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G11850.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA17G34730.1 (Glycine max), 5'ss of exon 3
TTGCTGATAGGATTAATCTCCCATGTATGCTGGTAAAAGGCAGTTACTACACTGGAACTGATGATGGGGCTGTGAACTTGATTAAACTAGATGACAAAAGgtattctttgattgtttgcattctagattcc---tgatattaggctcagtttgtatgtgatggtagtgatttttgcagagtcctaattcgttcttcacatgcag--
||||||||||||||||  | || || | |||||||||||| || || || |||||||||||||||||||||||||| |||||||||  ||||||   ||||||||  |    || | | ||  ||  | ||   | ||  | |  | || | || |       | |  | ||||    ||||  |  |  |  |  |  || ||  
TTGCTGATAGGATTAACGTTCCCTGCAAGCTGGTAAAAGGGAGCTATTATACTGGAACTGATGATGGGGCTGTGAATTTGATTAAAGCAGATGATGGAAGgtatttatcttatggtagaatgatatttccctttttattgttgctttaggtagtttaattcaatggacactttt----agtc--agcttatgatgtaattgaagac

upper sequence: AT5G11850.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA14G10790.2 (Glycine max), 5'ss of exon 3
TTGCTGATAGGATTAATCTCCCATGTATGCTGGTAAAAGGCAGTTACTACACTGGAACTGATGATGGGGCTGTGAACTTGATTAAACTAGATGACAAAAGgtattctt----tgattgtttgcattctagattcctgatattaggctca-gtttgtatgtgatggtagtgatttttgcagagtcctaattcgttcttcacatgcag
||||||||||||||||  | || || |||||||||||||| || || || ||||||||||| ||||| |||||||| |||||||||  ||||||   ||||||||  |     | | |  ||   | |   ||  |  ||||    | | | | || |       |||  | ||||    || ||||    ||  ||  |      
TTGCTGATAGGATTAACATTCCCTGCATGCTGGTAAAAGGGAGCTATTATACTGGAACTGACGATGGTGCTGTGAATTTGATTAAAGCAGATGATGGAAGgtatttatcttacggtagaatgttatttccctttttattattgcttttaaggtagtttaattcaatagacacttttagtcag-cctatgatgtaattggcg-----

upper sequence: AT5G11850.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv04s0008g01310.t01 (Vitis vinifera), 5'ss of exon 3
TTGCTGATAGGATTAATCTCCCATGTATGCTGGTAAAAGGCAGTTACTACACTGGAACTGATGATGGGGCTGTGAACTTGATTAAACTAGATGACAAAAGgtatt--ctttgattgtttgcattctagat-tcctgatattaggctcagtttgtatgtgatggtagtgatttttgcagagtcctaattcgttcttcacatgcag
| ||||||||||||||||| |||||| ||||||| ||||| || |||||||| || |||||||| |||||  | ||| |||||||| | ||| |   |||||  |   ||  ||   | |  |  ||  | | |||| | |   ||   |||| |  | |   |  |||| ||  || |     | ||  |  ||  |||||  
TAGCTGATAGGATTAATCTTCCATGTCTGCTGGTTAAAGGGAGCTACTACACGGGTACTGATGACGGGGCCATAAACCTGATTAAAATTGATAATGGAAGgtgctgatttccatccctggtctattatctcttctgagaattatct---tttggaaatcaattttctgatgttgccacatgggcagttt-taattggcatgcta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116416001|gb|EG458593.1|EG458593
EST:     ACTGGAACTGATGATGGGGCTGTGAACTTGATTAAACTAGATGACAAAAG                         TGAATACATTATTGATTTAATGGGTGCTCCGGGTGCTCTGATCCCTTCTGA
genomic: ACTGGAACTGATGATGGGGCTGTGAACTTGATTAAACTAGATGACAAAAGgtattctttg ... tcacatgcagTGAATACATTATTGATTTAATGGGTGCTCCGGGTGCTCTGATCCCTTCTGA