1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCGCGCCTTTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaattttttctcctggttcagtgtttttttctgatgtcttgtgagttcagtatacttaacagaattgtgtgtgttttgagctatttgcag
species | Arabidopsis thaliana |
transcript | AT5G10360.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAG GAATTCGAGGGATACGTATTEST: gi|116469836|gb|EG512428.1|EG512428
genomic: TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaatttt ... ctatttgcagGAATTCAAGGGATACGTATT
EST: TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAG GAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTEST: gi|125219080|gb|EL233165.1|EL233165
genomic: TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaatttt ... ctatttgcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGT
EST: TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAG GAATTCAAGGGATACEST: gi|164196132|gb|ES166821.1|ES166821
genomic: TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaatttt ... ctatttgcagGAATTCAAGGGATAC
EST: GGAAGTTAGCGGAGATGCTCTAGGCGAG GAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTEST: gi|164035006|gb|ES145970.1|ES145970
genomic: GGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaatttt ... ctatttgcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGT
EST: GGAAGTTAGCGGAGATGCTCTAGGCGAG GTAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGEST: gi|116469839|gb|EG512431.1|EG512431
genomic: GGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaatttt ... ctatttgcagG-AATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGG
EST: TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAG GAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTEST: gi|164018926|gb|ES077213.1|ES077213
genomic: TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaatttt ... ctatttgcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGT
EST: GACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAG GAATTCAAGGGATACGTATTCAAGATCATGGGAGGEST: gi|124731981|gb|EH823383.1|EH823383
genomic: GACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaatttt ... ctatttgcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGG
EST: TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAG GAATTCAAGGGATACGTATTCAAGATCATGGGEST: gi|125034291|gb|EL106560.1|EL106560
genomic: TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaatttt ... ctatttgcagGAATTCAAGGGATACGTATTCAAGATCATGGG
EST: TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAG GAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAEST: gi|164107881|gb|ES007223.1|ES007223
genomic: TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaatttt ... ctatttgcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAA
EST: TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAG GAATTCAAGGGATACGTATTC
genomic: TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaatttt ... ctatttgcagGAATTCAAGGGATACGTATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGCGCCTTTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaattttttctcctggttcagtgtttttttctgatgtcttgtgagttcagtatacttaacagaattgtgtgtgttttgagctatttgcag
- - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - GAGATG