Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGCGCCTTTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaattttttctcctggttcagtgtttttttctgatgtcttgtgagttcagtatacttaacagaattgtgtgtgttttgagctatttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G10360.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124789122|gb|EH878801.1|EH878801
EST:     TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAG                         GAATTCGAGGGATACGTATT
genomic: TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaatttt ... ctatttgcagGAATTCAAGGGATACGTATT
EST: gi|116420456|gb|EG463048.1|EG463048
EST:     TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAG                         GAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGT
genomic: TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaatttt ... ctatttgcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGT
EST: gi|116469836|gb|EG512428.1|EG512428
EST:     TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAG                         GAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGT
genomic: TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaatttt ... ctatttgcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGT
EST: gi|125219080|gb|EL233165.1|EL233165
EST:     TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAG                         GAATTCAAGGGATAC
genomic: TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaatttt ... ctatttgcagGAATTCAAGGGATAC
EST: gi|164196132|gb|ES166821.1|ES166821
EST:     GGAAGTTAGCGGAGATGCTCTAGGCGAG                         GAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGT
genomic: GGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaatttt ... ctatttgcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGT
EST: gi|164035006|gb|ES145970.1|ES145970
EST:     GGAAGTTAGCGGAGATGCTCTAGGCGAG                         GTAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGG
genomic: GGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaatttt ... ctatttgcagG-AATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGG
EST: gi|116469839|gb|EG512431.1|EG512431
EST:     TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAG                         GAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGT
genomic: TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaatttt ... ctatttgcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGT
EST: gi|116414309|gb|EG456901.1|EG456901
EST:     ACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAG                         GAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGT
genomic: ACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaatttt ... ctatttgcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGT
EST: gi|164018926|gb|ES077213.1|ES077213
EST:     GACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAG                         GAATTCAAGGGATACGTATTCAAGATCATGGGAGG
genomic: GACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaatttt ... ctatttgcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGG
EST: gi|47830707|gb|CK120391.1|CK120391
EST:     TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAG                         GAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGT
genomic: TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaatttt ... ctatttgcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGT
EST: gi|124731981|gb|EH823383.1|EH823383
EST:     TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAG                         GAATTCAAGGGATACGTATTCAAGATCATGGG
genomic: TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaatttt ... ctatttgcagGAATTCAAGGGATACGTATTCAAGATCATGGG
EST: gi|125034291|gb|EL106560.1|EL106560
EST:     TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAG                         GAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAA
genomic: TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaatttt ... ctatttgcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAA
EST: gi|164107881|gb|ES007223.1|ES007223
EST:     TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAG                         GAATTCAAGGGATACGTATTC
genomic: TTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaatttt ... ctatttgcagGAATTCAAGGGATACGTATTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCGCGCCTTTTTCGACAAGAGGCTCTCTCAGGAAGTTAGCGGAGATGCTCTAGGCGAGgtgaaattttttctcctggttcagtgtttttttctgatgtcttgtgagttcagtatacttaacagaattgtgtgtgttttgagctatttgcag

- - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - -  GAGATG