Sequence
atgc intronic sequence ATGC exonic sequenceGTATTGTCTGCTCAATTAGGAAGAAAGCCTGAGGATATTGTCAAGTTAGATGCTAATGAGAACCCATATGGTCCTCCTCCAGAGgcaagtctatatctttctttcactcattcatagatatgttgatgactggaaaaaggataattttgttagttagttagttgtcctctctaacttcaggtttcagaagctctgtgtag
Basic information
species | Arabidopsis thaliana |
transcript | AT5G10330.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G10330.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA16G27220.1 (Glycine max), 5'ss of exon 3
GTATTGTCTGCTCAATTAGGAAGAAAGCCTGAGGATATTGTCAAGTTAGATGCTAATGAGAACCCATATGGTCCTCCTCCAGAGgcaagtctatatctttctttcactcattcatagatatgttgatgactggaaaaaggataattttgttagttagtta-gttgtcctctctaacttcaggtttcagaagctctgtgtag
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GTTTTATCAGCTCGCCTTGGACGTAAGCCTGAGGATATCGTGAAGTTAGATGCTAATGAAAATCCTTATGGTCCCCCTCCAGAGgtgagttcttattatatttttttatgtctgtatttcccatactattgagtaaacgtgtaaaataattatttggtaatatgatgtttaacaatggcagggt-----------------
upper sequence: AT5G10330.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv18s0072g00940.t01 (Vitis vinifera), 5'ss of exon 3
GTATTGTCTGCTCAATTAGGAAGAAAGCCTGAGGATATTGTCAAGTTAGATGCTAATGAGAACCCATATGGTCCTCCTCCAGAGgcaagtc---tatatcttt-----ctttcactcattcatagatatgttgatgactggaaaa------aggataattttgttagttagtt-----agttgt----cctctctaacttcaggtttcagaagctctgtgtag------------------
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GTTTTGTCATCACGTCTTGGCAGGAAGCCTGAAGATATTGTCAAGCTAGATGCAAATGAAAACCCTTACGGTCCACCCCCAGAGgcaagtgagacacatgattgaaaacttagttttggtaccaaagatgttccggacttcataaccttttaaatgagtttcaagacttaatttttgaagctgttaggcacttttgactgtgaagtatacaa-ttatgtattgctttccaaatgttattagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86072939|gb|DR368696.1|DR368696EST: ATATTGTCAAGTTAGATGCTAATGAGAACCCATATGGTCCTCCTCCAGAG GTTTTTGAAGCATTAGGCAATATGAAATTCCCTTACGTTTATCCTGATCCA
genomic: ATATTGTCAAGTTAGATGCTAATGAGAACCCATATGGTCCTCCTCCAGAGgcaagtctat ... ctctgtgtagGTTTTTGAAGCATTAGGCAATATGAAATTCCCTTACGTTTATCCTGATCCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTATTGTCTGCTCAATTAGGAAGAAAGCCTGAGGATATTGTCAAGTTAGATGCTAATGAGAACCCATATGGTCCTCCTCCAGAGgcaagtctatatctttctttcactcattcatagatatgttgatgactggaaaaaggataattttgttagttagttagttgtcctctctaacttcaggtttcagaagctctgtgtag
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