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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATACTGCAGGACAGGAGAGATTTCGAAGTCTAATACCAAGTTATATCAGAGATTCTTCTGTTGCTGTAATTGTCTATGATGTTGCAAgtaaggcttcttctgtgagaacttttcagctttaccatcaaagtttcctcttttgtgtacaatctacacaggatccttctttttgcaaggatgctgtgtaaagtctcatcttttttgttttgttattttaatgtatag

Basic information

species Arabidopsis thaliana
transcript AT5G10260.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G10260.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G128771_T01 (Zea mays), 5'ss of exon 3
GGATACTGCAGGACAGGAGAGATTTCGAAGTCTAATACCAAGTTATATCAGAGATTCTTCTGTTGCTGTAATTGTCTATGATGTTGCAAgtaaggcttcttctgtgagaacttttcagctttaccatcaaagt-ttcctcttttgtgtacaatctacacaggatccttctttttgc--aaggatgctgtgtaaagtctcatcttttttgttttgttattttaatgtatag
||||||||||||||||||||| ||| | ||||| || ||||| || ||||| || ||||||||||| ||  |||| ||||||||  | ||| || |          | ||| ||  |   ||   ||||  |  |  | |      || | ||||   | || |||    ||  |   ||  ||| | || | |                                    
GGATACTGCAGGACAGGAGAGGTTTAGGAGTCTTATTCCAAGCTACATCAGGGACTCTTCTGTTGCGGTGGTTGTTTATGATGTATCCAgtgagtcactc-----aaaaaccttgtatagttgtaatcattgcatgacaccagctggtccgatctttcctggttccagacttccggtgaacaatgttatgcata------------------------------------

upper sequence: AT5G10260.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA05G31200.1 (Glycine max), 5'ss of exon 3
GGATACTGCAGGACAGGAGAGATTTCGAAGTCTAATACCAAGTTATATCAGAGATTCTTCTGTTGCTGTAATTGTCTATGATGTTGCAAgtaaggcttct--tctgtgagaacttttcagctttaccatcaa----agtttcctcttttgtgtacaatctacacaggatccttctttttgcaaggatgctgtgtaaagtctcatcttttttgttttgttattttaatgtatag
|||||||||||| || || |||||| ||||||| || ||||| || || ||||||||||||||||| || || || ||||||||||| ||| ||  || |    | |   || ||       | |  ||  |    | ||| ||   |  |   |||| | | || ||     |||||   ||  ||                                              
GGATACTGCAGGGCAAGAAAGATTTAGAAGTCTCATTCCAAGCTACATAAGAGATTCTTCTGTTGCGGTTATAGTATATGATGTTGCTAgtgagttttataagttataccaatttcattatctaataattgacaggatttttctggatctttatcaattttctcatgacataacttttccaaattattt--------------------------------------------

upper sequence: AT5G10260.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA08G14390.1 (Glycine max), 5'ss of exon 3
GGATACTGCAGGACAGGAGAGATTTCGAAGTCTAATACCAAGTTATATCAGAGATTCTTCTGTTGCTGTAATTGTCTATGATGTTGCAAgtaaggcttcttctgtgagaacttttcagctttaccatcaaagtttcctcttttgtgtacaatctacacaggatcct-tctttttgcaaggatgctgtgtaaagtctcatcttttttgttttgttattttaatgtatag
|||||||||||| || || |||||| ||||||| || ||||| || || ||||||||||||||||| || || || ||||||||||| ||| ||     || | |  |  |||||       ||  |||   | |  |     |  |    | |  |     |||| | || |    |     || |   || |                                  
GGATACTGCAGGGCAAGAAAGATTTAGAAGTCTCATTCCAAGCTACATAAGAGATTCTTCTGTTGCAGTTATAGTATATGATGTTGCTAgtgag-----ttttatatgttcttttatataccactttcattatctaattaacaggattttttatggatcttttcctattttctcatgacataacttttccaaat----------------------------------

upper sequence: AT5G10260.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA11G38110.1 (Glycine max), 5'ss of exon 3
GGATACTGCAGGACAGGAGAGATTTCGAAGTCTAATACCAAGTTATATCAGAGATTCTTCTGTTGCTGTAATTGTCTATGATGTTGCAAgtaaggcttcttctgtgagaacttttcagctttaccatcaaagtttcctcttttgtgtacaatctacacaggatccttctttttgcaaggatgctgtgtaaagtctcatcttttttgttttgttattttaatgtatag
|||||||||||| || || || ||| ||||||| || ||||| || || ||||||||||||||||| || ||||| |||||||| || ||| ||        |||      ||||||  |||    || || | ||   ||   | |  |||   |    | || ||||   |     ||   | | | | |||  |  | |                         
GGATACTGCAGGGCAAGAAAGGTTTAGAAGTCTCATTCCAAGCTACATAAGAGATTCTTCTGTTGCAGTTATTGTATATGATGTAGCCAgtgag--------tgtagtggtttttcattttt----tctaaatgtcagtttcattatctaattagc-tgtgttctttctgaatcttccgagattttctcatgtcataattct-------------------------

upper sequence: AT5G10260.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA18G02040.1 (Glycine max), 5'ss of exon 3
GGATACTGCAGGACAGGAGAGATTTCGAAGTCTAATACCAAGTTATATCAGAGATTCTTCTGTTGCTGTAATTGTCTATGATGTTGCAAgtaaggcttcttctgtgagaactttt-cagct-ttaccatcaaagtttcctcttttgtgtacaatctaca-caggatccttctttttgcaaggatgctgtgtaaagtctcatcttttttgttttgttattttaatgtatag
|||||||||||| || || |||||| ||||||| || ||||| || || ||||||||||||||||| ||  |||| || ||||| || ||| || ||  || | |   |  ||||  | ||   |   |||  || |  | |  ||||| |  |||  | |   |    | || |  | |    | | |                                         
GGATACTGCAGGGCAAGAAAGATTTAGAAGTCTGATTCCAAGCTACATAAGAGATTCTTCTGTTGCAGTTGTTGTATACGATGTAGCCAgtgagtctagttgtttttcattttttgtaactgccagtttcattgtctaatttgctgtgttctttctggatctttacagattttctcacgacatagttct-----------------------------------------

upper sequence: AT5G10260.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv00s0665g00040.t01 (Vitis vinifera), 5'ss of exon 3
GGATACTGCAGGACAGGAGAGATTTCGAAGTCTAATACCAAGTTATATCAGAGATTCTTCTGTTGCTGTAATTGTCTATGATGTTGCAAgtaag-gcttcttctgtgagaactt-ttcagctttaccatcaaagtttcctcttttgtgtacaatctacacaggatccttctttttgcaaggatgctgtgtaaagtctcatcttttttgttttgttattttaatgtatag
||||||||| || || || |||||| | ||||| |||||||| || || ||||||||||| |||||||| ||||| |||||||||| |||| ||   |  ||   | || |    || || |||   |  ||   ||  | | |    | || | |||    ||   |  | |   |||  | |    | |                                      
GGATACTGCTGGCCAAGAAAGATTTAGGAGTCTTATACCAAGCTACATAAGAGATTCTTCAGTTGCTGTGATTGTTTATGATGTTGGAAgtgagtagtaattaaatcagcataaattgagttttttgagaaaccattgatttctaacatgcactttact---gaatttgttgtacccaaataagggaagcag-------------------------------------