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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAGgtatcatatgaataggacgaaaggttcatttccattacattagcttctctgctaactgattgtttttgcataatcctttttcctcag

Basic information

species Arabidopsis thaliana
transcript AT5G09660.3
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125292694|gb|EL306779.1|EL306779
EST:     CAGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAG                         GTTAAACCTCCTAGCAGCTTCACACCTCAAGAAAT
genomic: CAGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAGgtatcatatg ... ttttcctcagGTTAAACCTCCTAGCAGCTTCACACCTCAAGAAAT
EST: gi|47830941|gb|CK120625.1|CK120625
EST:     CAGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAG                         GTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC
genomic: CAGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAGgtatcatatg ... ttttcctcagGTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC
EST: gi|124939320|gb|EL015870.1|EL015870
EST:     CAGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAG                         GTTAAACCTCCTAGCAGCTTC
genomic: CAGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAGgtatcatatg ... ttttcctcagGTTAAACCTCCTAGCAGCTTC
EST: gi|124764172|gb|EH854302.1|EH854302
EST:     TAGTTGGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAG                         GTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC
genomic: TAGTT-GGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAGgtatcatatg ... ttttcctcagGTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC
EST: gi|47830575|gb|CK120259.1|CK120259
EST:     CAGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAG                         GTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGAC
genomic: CAGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAGgtatcatatg ... ttttcctcagGTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGAC
EST: gi|116459617|gb|EG502209.1|EG502209
EST:     CAGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAG                         GTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC
genomic: CAGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAGgtatcatatg ... ttttcctcagGTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC
EST: gi|86086458|gb|DR382217.1|DR382217
EST:     CAGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAG                         GTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAGC
genomic: CAGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAGgtatcatatg ... ttttcctcagGTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC
EST: gi|125290668|gb|EL304753.1|EL304753
EST:     CCACTACTGTCACAG                         GTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC
genomic: CCACTACTGTCACAGgtatcatatg ... ttttcctcagGTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC
EST: gi|125203639|gb|EL218593.1|EL218593
EST:     AGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAG                         GTTAAGCCTCCTAGCAGCTTCACACCTCAAGAAAT
genomic: AGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAGgtatcatatg ... ttttcctcagGTTAAACCTCCTAGCAGCTTCACACCTCAAGAAAT
EST: gi|124983492|gb|EL056220.1|EL056220
EST:     AGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCAACTACTGTCACAG                         GTTAAACCTCCTAGCAGC
genomic: AGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCA-CTACTGTCACAGgtatcatatg ... ttttcctcagGTTAAACCTCCTAGCAGC
EST: gi|125007956|gb|EL080225.1|EL080225
EST:     CGCCGGAGTCACAATCTTGCCACTACTGTCACNG                         GTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC
genomic: CGCCGGAGTCACAATCTTGCCACTACTGTCACAGgtatcatatg ... ttttcctcagGTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC
EST: gi|116459695|gb|EG502287.1|EG502287
EST:     CAGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAA                         GTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC
genomic: CAGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAGgtatcatatg ... ttttcctcagGTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC
EST: gi|124880277|gb|EH959179.1|EH959179
EST:     AGTAGTTGGGGGACACGCCGGAGTCACAATCTTAGCCACTACTGTCACAG                         GTTAAACCTCCTAGC
genomic: AGTAGTTGGGGGACACGCCGGAGTCACAATCTT-GCCACTACTGTCACAGgtatcatatg ... ttttcctcagGTTAAACCTCCTAGC
EST: gi|125150973|gb|EL183346.1|EL183346
EST:     GGAGTCACAATCTTGCCACTACCGTCACAG                         GTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC
genomic: GGAGTCACAATCTTGCCACTACTGTCACAGgtatcatatg ... ttttcctcagGTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC
EST: gi|116459539|gb|EG502131.1|EG502131
EST:     CAGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAG                         GTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC
genomic: CAGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAGgtatcatatg ... ttttcctcagGTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC
EST: gi|125029998|gb|EL102267.1|EL102267
EST:     CAATCTTGCCACTACTGTCACAG                         GTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC
genomic: CAATCTTGCCACTACTGTCACAGgtatcatatg ... ttttcctcagGTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC
EST: gi|124777508|gb|EH867451.1|EH867451
EST:     TTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAG                         GTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC
genomic: TTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAGgtatcatatg ... ttttcctcagGTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC
EST: gi|125210989|gb|EL225943.1|EL225943
EST:     CACAATCTTGCCACTACTGTCACAG                         GTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC
genomic: CACAATCTTGCCACTACTGTCACAGgtatcatatg ... ttttcctcagGTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC
EST: gi|125284376|gb|EL298461.1|EL298461
EST:     AGTAGTTGGGGGACACGCCGGAGTTCACAATCTTGCCACTACTGTCACAG                         GTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTA
genomic: AGTAGTTGGGGGACACGCCGGAG-TCACAATCTTGCCACTACTGTCACAGgtatcatatg ... ttttcctcagGTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTA
EST: gi|125015723|gb|EL087992.1|EL087992
EST:     CACTACTGTCACAG                         GTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTG
genomic: CACTACTGTCACAGgtatcatatg ... ttttcctcagGTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTG
EST: gi|124985045|gb|EL057661.1|EL057661
EST:     CAGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAG                         GTTAAACCTCCTAGCAGCTTACACACCTCAAGAAATTGAGTACCTGACAAA
genomic: CAGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAGgtatcatatg ... ttttcctcagGTTAAACCTCCTAGCAGCTT-CACACCTCAAGAAATTGAGTACCTGACAAA
EST: gi|124787751|gb|EH877430.1|EH877430
EST:     CAGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAG                         GTTAAACCTCCTAGCAGCTTCA
genomic: CAGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAGgtatcatatg ... ttttcctcagGTTAAACCTCCTAGCAGCTTCA
EST: gi|125150676|gb|EL183198.1|EL183198
EST:     GTCACAATCTTGCCACTACTGTCACAG                         GTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC
genomic: GTCACAATCTTGCCACTACTGTCACAGgtatcatatg ... ttttcctcagGTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC
EST: gi|124950290|gb|EL025765.1|EL025765
EST:     CAGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAG                         GTTAAACCTCCTAGCAGCTTCACACCTCAAG
genomic: CAGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAGgtatcatatg ... ttttcctcagGTTAAACCTCCTAGCAGCTTCACACCTCAAG
EST: gi|124817935|gb|EH902801.1|EH902801
EST:     GTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAG                         GTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC
genomic: GTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAGgtatcatatg ... ttttcctcagGTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC
EST: gi|125084957|gb|EL144983.1|EL144983
EST:     CAGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAG                         GTTAAACCTCCTAGCAG
genomic: CAGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAGgtatcatatg ... ttttcctcagGTTAAACCTCCTAGCAG
EST: gi|124739351|gb|EH830513.1|EH830513
EST:     ACACGCCGGAGTCACAATCTTGCCACTACTGTCACAG                         GTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC
genomic: ACACGCCGGAGTCACAATCTTGCCACTACTGTCACAGgtatcatatg ... ttttcctcagGTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC
EST: gi|124845181|gb|EH929618.1|EH929618
EST:     CAGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAG                         GTTAAACCTCCTAGCAGCTTCACACCT
genomic: CAGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAGgtatcatatg ... ttttcctcagGTTAAACCTCCTAGCAGCTTCACACCT
EST: gi|125313606|gb|EL327691.1|EL327691
EST:     CTTGCCACTACTGTCACAG                         GTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC
genomic: CTTGCCACTACTGTCACAGgtatcatatg ... ttttcctcagGTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC
EST: gi|125249770|gb|EL263855.1|EL263855
EST:     CAGTAGTT-GGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAG                         GTTAAACCTCCTAGCA
genomic: CAGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAGgtatcatatg ... ttttcctcagGTTAAACCTCCTAGCA
EST: gi|124842186|gb|EH926623.1|EH926623
EST:     TCTTGCCACTACTGTCACAG                         GTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC
genomic: TCTTGCCACTACTGTCACAGgtatcatatg ... ttttcctcagGTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC
EST: gi|124938048|gb|EL014718.1|EL014718
EST:     CAGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAG                         GTTAAACCTCCTAGCAGCTTCACACCTCA
genomic: CAGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAGgtatcatatg ... ttttcctcagGTTAAACCTCCTAGCAGCTTCACACCTCA
EST: gi|125286087|gb|EL300172.1|EL300172
EST:     CAGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAG                         GTTAAACCTCCTAGCAG
genomic: CAGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAGgtatcatatg ... ttttcctcagGTTAAACCTCCTAGCAG
EST: gi|124900254|gb|EH974872.1|EH974872
EST:     CTACTGTCACAG                         GTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC
genomic: CTACTGTCACAGgtatcatatg ... ttttcctcagGTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC
EST: gi|125192305|gb|EL207259.1|EL207259
EST:     TAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAG                         GTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC
genomic: TAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAGgtatcatatg ... ttttcctcagGTTAAACCTCCTAGCAGCTTCACACCTCAAGAAATTGAGTACCTGACAAAC