Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGATGCTTTGGTTACCACTGGCCTCTCTAAGCTTGGCTACAACTATGTTAACATCGgtaaggctctaactcataatatagattaaaaaaattctttgtatcactctgattcagagtctctgaagttgattaatgtttcatcagtgtgatagcttagaaataaataaataaaaatcattattgtgtttcacagtactgaaatcttggtttgttcttcag

Basic information

species Arabidopsis thaliana
transcript AT5G08380.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86044318|gb|DR340073.1|DR340073
EST:     TTTGGTTACCACTGGCCTCTCTAAGCTTGGCTACAACTATGTTAACATCG                         ATGATTGCTGGGCTGAAATTTCTCGTGACAGCAAG
genomic: TTTGGTTACCACTGGCCTCTCTAAGCTTGGCTACAACTATGTTAACATCGgtaaggctct ... tgttcttcagATGATTGCTGGGCTGAAATTTCTCGTGACAGCAAG
EST: gi|86044315|gb|DR340070.1|DR340070
EST:     TTTGGTTACCACTGGCCTCTCTAAGCTTGGCTACAACTATGTTAACATCG                         ATGATTGCTGGGCTGAAATTTCTCGTGACAGCAAG
genomic: TTTGGTTACCACTGGCCTCTCTAAGCTTGGCTACAACTATGTTAACATCGgtaaggctct ... tgttcttcagATGATTGCTGGGCTGAAATTTCTCGTGACAGCAAG
EST: gi|86044317|gb|DR340072.1|DR340072
EST:     TTTGGTTACCACTGGCCTCTCTAAGCTTGGCTACAACTATGTTAACATCG                         ATGATTGCTGGGCTGAAATTTCTCGTGACAGCAAG
genomic: TTTGGTTACCACTGGCCTCTCTAAGCTTGGCTACAACTATGTTAACATCGgtaaggctct ... tgttcttcagATGATTGCTGGGCTGAAATTTCTCGTGACAGCAAG
EST: gi|86044314|gb|DR340069.1|DR340069
EST:     TTTGGTTACCACTGGCCTCTCTAAGCTTGGCTACAACTATGTTAACATCG                         ATGATTGCTGGGCTGAAATTTCTCGTGACAGCAAG
genomic: TTTGGTTACCACTGGCCTCTCTAAGCTTGGCTACAACTATGTTAACATCGgtaaggctct ... tgttcttcagATGATTGCTGGGCTGAAATTTCTCGTGACAGCAAG