1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCCTGATATGGGCACTAACGCTCAAACCATGGCTTGGATTCTTGATGAGTACTCCAAGTTTCATGGTCATTCCCCTGCTGTTGTCACTGGAAAGCCCATTgtaaggcttttaagattttggttatatcattctgagtccggaatctgttgtttattctatggatgttttcttgatttgaattaattcgatgtttctatgtgattaccatagttttgagctttttggtatagaagtaactgttggatcactttggtgtag
species | Arabidopsis thaliana |
transcript | AT5G07440.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACTCCAAGTTTCATGGTCATTCCCCTGCTGTTGTCACTGGAAAGCCCATT GATCTTGGTGGTTCATTAGGTAGGGAAGCTGCCACAGGTCGTGGTGTAGTAEST: gi|116477118|gb|EG519710.1|EG519710
genomic: ACTCCAAGTTTCATGGTCATTCCCCTGCTGTTGTCACTGGAAAGCCCATTgtaaggcttt ... tttggtgtagGATCTTGGTGGTTCATTAGGTAGGGAAGCTGCCACAGGTCGTGGTGTAGTA
EST: ACTCCAAGTTTCATGGTCATTCCCCTGCTGTTGTCACTGGAAAGCCCATT GATCTTGGTGGTTCATTAGGTAGGGAAGCTACCACAGGTCGTGGTGTAGTAEST: gi|116402429|gb|EG445021.1|EG445021
genomic: ACTCCAAGTTTCATGGTCATTCCCCTGCTGTTGTCACTGGAAAGCCCATTgtaaggcttt ... tttggtgtagGATCTTGGTGGTTCATTAGGTAGGGAAGCTGCCACAGGTCGTGGTGTAGTA
EST: ACTCCAAGTTTCATGGTCATTCCCCTGCTGTTGTCACTGGAAAGCCCATT GATCTTGGTGGTTCATTAGGTAGGGAAGCTGCCACAGGTCGTGGTGTAGTAEST: gi|116402756|gb|EG445348.1|EG445348
genomic: ACTCCAAGTTTCATGGTCATTCCCCTGCTGTTGTCACTGGAAAGCCCATTgtaaggcttt ... tttggtgtagGATCTTGGTGGTTCATTAGGTAGGGAAGCTGCCACAGGTCGTGGTGTAGTA
EST: ACTCCAAGTTTCATGGTCATTCCCCTGCTGTTGTCACTGGAAAGCCCATT GATCTTGGTGGTTCATTAGGTAGGGAAGCTGCCACAGGTCGTGGTGTAGTAEST: gi|116401885|gb|EG444477.1|EG444477
genomic: ACTCCAAGTTTCATGGTCATTCCCCTGCTGTTGTCACTGGAAAGCCCATTgtaaggcttt ... tttggtgtagGATCTTGGTGGTTCATTAGGTAGGGAAGCTGCCACAGGTCGTGGTGTAGTA
EST: ACTCCAAGTTTCATGGTCATTCCCCTGCTGTTGTCACTGGAAAGCCCATT GATCTTGGTGGTTCATTAGGTAGGGAAGCTGCCACAGGTCGTGGTGTAGTAEST: gi|116401898|gb|EG444490.1|EG444490
genomic: ACTCCAAGTTTCATGGTCATTCCCCTGCTGTTGTCACTGGAAAGCCCATTgtaaggcttt ... tttggtgtagGATCTTGGTGGTTCATTAGGTAGGGAAGCTGCCACAGGTCGTGGTGTAGTA
EST: ACTCCAAGTTTCATGGTCATTCCCCTGCTGTTGTCACTGGAAAGCCCATT GATCTTGGTGGTTCATTAGGTAGGGAAGCTGCCACAGGTCGTGGTGTAGTAEST: gi|116416105|gb|EG458697.1|EG458697
genomic: ACTCCAAGTTTCATGGTCATTCCCCTGCTGTTGTCACTGGAAAGCCCATTgtaaggcttt ... tttggtgtagGATCTTGGTGGTTCATTAGGTAGGGAAGCTGCCACAGGTCGTGGTGTAGTA
EST: ACTCCAAGTTTCATGGTCATTCCCCTGCTGTTGTCACTGGAAAGCCCATT GATCTTGGTGGTTCATTAGGTAGGGAAGCTGCCACAGGTCGTGGTGTAGTAEST: gi|116400111|gb|EG442703.1|EG442703
genomic: ACTCCAAGTTTCATGGTCATTCCCCTGCTGTTGTCACTGGAAAGCCCATTgtaaggcttt ... tttggtgtagGATCTTGGTGGTTCATTAGGTAGGGAAGCTGCCACAGGTCGTGGTGTAGTA
EST: ACTCCAAGTTTCATGGTCATTCCCCTGCTGTTGTCACTGGAAAGCCCATT GATCTTGGTGGTTCATTAGGTAGGGAAGCTGCCACAGGTCGTGGTGTAGTAEST: gi|116402751|gb|EG445343.1|EG445343
genomic: ACTCCAAGTTTCATGGTCATTCCCCTGCTGTTGTCACTGGAAAGCCCATTgtaaggcttt ... tttggtgtagGATCTTGGTGGTTCATTAGGTAGGGAAGCTGCCACAGGTCGTGGTGTAGTA
EST: ACTCCAAGTTTCATGGTCATTCCCCTGCTGTTGTCACTGGAAAGCCCATT GATCTTGGTGGTTCATTAGGTAGGGAAGCTGCCACAGGTCGTGGTGTAGTAEST: gi|301501353|gb|HO206893.1|HO206893
genomic: ACTCCAAGTTTCATGGTCATTCCCCTGCTGTTGTCACTGGAAAGCCCATTgtaaggcttt ... tttggtgtagGATCTTGGTGGTTCATTAGGTAGGGAAGCTGCCACAGGTCGTGGTGTAGTA
EST: ACTCCAAGTTTCATGGTCATTCCCCTGCTGTTGTCACTGGAAAGCCCATT GATCTTGGTGGTTCATTAAGTAGGGAAGCTGCCACAGGTCGTGGTGTAGTAEST: gi|116401660|gb|EG444252.1|EG444252
genomic: ACTCCAAGTTTCATGGTCATTCCCCTGCTGTTGTCACTGGAAAGCCCATTgtaaggcttt ... tttggtgtagGATCTTGGTGGTTCATTAGGTAGGGAAGCTGCCACAGGTCGTGGTGTAGTA
EST: ACTCCAAGTTTCATGGTCATTCCCCTGCTGTTGTCACTGGAAAGCCCATT GATCTTGGTGGTTCATTAGGTAGGGAAGCTGCCGCAGGTCGTGGTGTAGTAEST: gi|116445210|gb|EG487802.1|EG487802
genomic: ACTCCAAGTTTCATGGTCATTCCCCTGCTGTTGTCACTGGAAAGCCCATTgtaaggcttt ... tttggtgtagGATCTTGGTGGTTCATTAGGTAGGGAAGCTGCCACAGGTCGTGGTGTAGTA
EST: ACTCCAAGTTTCATGGTCATTCCCCTGCTGTTGTCACTGGAAAGCCCATT GATCTTGGTGGTTCATTAGGTAGGGAAGCTGCCACAGGTCGTGGTGTAGTAEST: gi|116485622|gb|EG528214.1|EG528214
genomic: ACTCCAAGTTTCATGGTCATTCCCCTGCTGTTGTCACTGGAAAGCCCATTgtaaggcttt ... tttggtgtagGATCTTGGTGGTTCATTAGGTAGGGAAGCTGCCACAGGTCGTGGTGTAGTA
EST: ACTCCAAGTTTCATGGTCATTCCCCTGCTGTTGTCACTGGAAAGCCCATT GATCTTGGTGGTTCATTAGGTAGGGAAGCTGCCACAGGTCGTGGTGTAGTA
genomic: ACTCCAAGTTTCATGGTCATTCCCCTGCTGTTGTCACTGGAAAGCCCATTgtaaggcttt ... tttggtgtagGATCTTGGTGGTTCATTAGGTAGGGAAGCTGCCACAGGTCGTGGTGTAGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTGATATGGGCACTAACGCTCAAACCATGGCTTGGATTCTTGATGAGTACTCCAAGTTTCATGGTCATTCCCCTGCTGTTGTCACTGGAAAGCCCATTgtaaggcttttaagattttggttatatcattctgagtccggaatctgttgtttattctatggatgttttcttgatttgaattaattcgatgtttctatgtgattaccatagttttgagctttttggtatagaagtaactgttggatcactttggtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT