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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGCATTGATGCAAGCTTGTAGATACGGACATTGGGAAGTTGTGCAAACTCTTCTGCTTTTCCGATGCAATgtgagttcttttcatcactagttgaaagaaaattataacatttggttttgattttgattcttagtatcgtctttctttgtcaaag

Basic information

species Arabidopsis thaliana
transcript AT5G07270.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G07270.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA16G32090.1 (Glycine max), 5'ss of exon 3
ACAGCATTGATGCAAGCTTGTAGATACGGACATTGGGAAGTTGTGCAAACTCTTCTGCTTTTCCGATGCAATgtgagttcttttcatcactagttgaaagaaaattataacatttggttttgattttgattcttagtatcgtctttctttgtcaaag---------------
|| || |||||||||||||||||||| || ||||||||||||||||| || |||||||| ||| ||||||||||||||     |  ||  |   || ||| || | ||    ||   | ||  ||||  |        |  | | | || || | |                
ACTGCTTTGATGCAAGCTTGTAGATATGGTCATTGGGAAGTTGTGCAGACCCTTCTGCTCTTCAGATGCAATgtgagtatgagttctccatttatggaaggaattcattctcttcactgttcttttttctctccctctttttgtcttttagttatatttgaactgttggatg

upper sequence: AT5G07270.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA09G26560.1 (Glycine max), 5'ss of exon 3
ACAGCATTGATGCAAGCTTGTAGATACGGACATTGGGAAGTTGTGCAAACTCTTCTGCTTTTCCGATGCAATgtgag---------ttcttttcatcactagttgaaagaaaattataacatttggttttgattttgattcttagtatcgtct---ttctttgtcaaag---
|| || |||||||||||||||||||| ||||||||||||||||| || || |||||||| |||  ||||||||||||         | | ||| ||     ||    | | |     ||  ||   | |   |||||  | |||||    | |    | || |    ||   
ACCGCTTTGATGCAAGCTTGTAGATATGGACATTGGGAAGTTGTACAGACCCTTCTGCTCTTCAAATGCAATgtgagtatgagtactccattttatttactgtgttcatataggaggaattttctctctcctttttgtcttttagttatatttgaactgttggatggagacc

upper sequence: AT5G07270.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA10G38270.1 (Glycine max), 5'ss of exon 3
ACAGCATTGATGCAAGCTTGTAGATACGGACATTGGGAAGTTGTGCAAACTCTTCTGCTTTTCCGATGCAATgtgagttcttttcatcactagttgaaagaaaattataacatttggttttga-ttttgattcttagtatcgt-ctttctttgtcaaag--------------
|| || |||||||||||||||||||| || |||||||| ||||| ||||| ||||| || ||| |||||||||||||| || || ||      ||               ||||   | |  | |||| ||   | ||   |   ||||| |  ||  |              
ACGGCGTTGATGCAAGCTTGTAGATATGGGCATTGGGAGGTTGTACAAACACTTCTACTCTTCAGATGCAATgtgagtcctgtt-atattatattttcctccccccccctcattctatctgaactttttataagttgtgctgcattttctatagcagggagataacaggtcat

upper sequence: AT5G07270.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA20G29590.1 (Glycine max), 5'ss of exon 3
ACAGCATTGATGCAAGCTTGTAGATACGGACATTGGGAAGTTGTGCAAACTCTTCTGCTTTTCCGATGCAATgtgagttcttttcatcactagttgaaagaaaattataacatttggttttgattttgattcttagtatcgtctttctttgtcaaag-------------------
|| ||||||||||||||||||||||| || |||||||| ||||  || || ||| | || ||| |||||||||||||| || ||      || ||            |  | ||   | |  | |||  || | ||| | | | |  ||  |  |                     
ACCGCATTGATGCAAGCTTGTAGATATGGGCATTGGGAGGTTGCACAGACACTTTTACTCTTCAGATGCAATgtgagtcctgttatattatactttcctttccccctt--ctttctatctgaacttt--ttataagttttgccctatttaatatagcacggagataacttggcatg

upper sequence: AT5G07270.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv16s0100g00690.t01 (Vitis vinifera), 5'ss of exon 4
ACAGCATTGATGCAAGCTTGTAGATACGGACATTGGGAAGTTGTGCAAACTCTTCTGCTTTTCCGATGCAATgtgagttcttttcatcactagttgaaagaaaattataacatttggttttgattttgattcttagtatcgtctttctttgtcaaag--------------------
|| ||||||||||||||||||||||| || |||||||||||||| || ||||| ||||| ||| ||||||||||||||| |  |  |   |   |       |  |||    |||  ||| |   ||||  | ||      | |||  ||    |                      
ACGGCATTGATGCAAGCTTGTAGATATGGGCATTGGGAAGTTGTTCAGACTCTACTGCTCTTCAGATGCAATgtgagttttggtttttgatgtcttc-----acctatttgtttttctttagtagttgaaacctaaagctttttttggtttctgagaaaaactaggagaacaaagag