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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTGGAGAAGGGAAATGGAGTGGATTCTTAGTGTTAGTGATCACATCGTCGAGTTAACACCTTCAACACAAACTTATCCAGACGGCAACAAGTTTGAGgtaagctcttgattttttaagattgttgcaactgcaattactggagtttgaattgtgaatcttcttcag

Basic information

species Arabidopsis thaliana
transcript AT5G05940.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G05940.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA14G06930.1 (Glycine max), 5'ss of exon 4
GATGTGGAGAAGGGAAATGGAGTGGATTCTTAGTGTTAGTGATCACATCGTCGAGTTAACACCTTCAACACAAACTTATCCAGACGGCAACAAGTTTGAGgtaagctcttgattttttaagattgttgcaactgcaatta----ctggagtttgaattgtgaatcttcttcag----------------------------------------------------
 |||||| | || || ||||| ||  |||||||||||||||||||||| || ||||||| ||||||    ||||| | |||||| || |  ||| ||||||||   | ||||||   ||    | |||  ||| |||||     || ||    || || || || || ||                                                       
AATGTGGCGGAGAGAGATGGAATGCCTTCTTAGTGTTAGTGATCACATTGTTGAGTTAATACCTTCTTGGCAAACATTTCCAGATGGAAGTAAGCTTGAGgtataat-ttgattgagtactcat-ttgtgacttcaattttcttctcgataaagagttctgtattttgtttttaattgacttaggaattgcaattgtgatgtttgtaatatggtgcattctgcag

upper sequence: AT5G05940.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA02G41980.1 (Glycine max), 5'ss of exon 3
GATGTGGAGAAGGGAAATGGAGTGGATTCTTAGTGTTAGTGATCACATCGTCGAGTTAACACCTTCAACACAAACTTATCCAGACGGCAACAAGTTTGAGgtaagctc---ttgattttttaag-attgttgcaactgca-----attactggagtttgaattgtgaatcttcttcag---------------------------------------------
 |||||| | || || ||||| ||| |||||||||||||||||||||| || |||||||  |||||    ||||| | |||||| || |  ||| ||||||||   |    |||| |  | |    ||  | ||| |        | ||  |   | |  | | ||| | |  || |                                              
AATGTGGCGGAGAGAGATGGAATGGCTTCTTAGTGTTAGTGATCACATTGTTGAGTTAATTCCTTCTTGGCAAACATTTCCAGATGGAAGTAAGCTTGAGgtataattggattgagtactcatttgttacttcaattttcttctcaataaagagctctctactttgattttaattaacacagcagttacagttgtgatgtttgtaaccatgtgtattctgcag