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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAATTTATGGAAAAGTGGTTGTTGCAAGCAAGGTTCCTCTTCCTAACTACCGACCAGATTTGGATGATAAGCGACCACAACGGGAGgtaacagtgtctcccttggtttaccaaaatcataatgcacagtttttatttgtagttttatgctgaaattgtaatgcatctcatcgtgcag

Basic information

species Arabidopsis thaliana
transcript AT5G04895.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G04895.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA08G24630.1 (Glycine max), 5'ss of exon 6
TGAAATTTATGGAAAAGTGGTTGTTGCAAGCAAGGTTCCTCTTCCTAACTACCGACCAGATTTGGATGATAAGCGACCACAACGGGAGgtaacagtgtctcccttggtttaccaaaatcataatgcacagtttttatttg--tagttttatgctgaaattgtaat------gcatctcatcgt-gcag
|||  | | ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || || |||||| | ||||||| |    ||   | ||   |      |    |    ||  || ||   |  |  | | |||||  ||   ||||       |||  ||| ||  |||
TGAGTTGTTTGGAAAAGTGGTTGTTGCAAGCAAGGTGCCTCTTCCTAACTACCGTCCAGATTTGGATGACAAACGTCCACAAAGAGAGgtaataac--ctgggtgggaccagtggg-tagggagcttcaacttataccaggttgatgtcatgctagaaaaataatcctcctacattccattgtcacag

upper sequence: AT5G04895.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA15G29910.1 (Glycine max), 5'ss of exon 1
-----TGAAATTTATGGAAAAGTGGTTGTTGCAAGCAAGGTTCCTCTTCCTAACTACCGACCAGATTTGGATGATAAGCGACCACAACGGGAGgtaaca------gtgtctcccttggtttaccaaaatcataatgcacagtttttatttgtagttttatgctgaaattgtaatgcatctcatcgt-gcag
     |||  | | |||||||||||||||||| |||||||| ||||||||||||||| | |||||||||||||| || || |||||| | ||||||| |      |||   ||  ||| |    ||  |||   |  ||     ||  |   |   |        |||  |  | |||  ||| ||  |||
CACAGTGAGTTGTTTGGAAAAGTGGTTGTTGCTAGCAAGGTGCCTCTTCCTAACTACTGTCCAGATTTGGATGACAAACGTCCACAAAGAGAGgtaataacttgggtgggaccagtgggtatggaacttcaacttataccaggattgctgtcatcctagaaaaataatcctcctacattccattgtcacag