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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTCCAATGCCAATGGTTATGATAGACCAGGATGCTGACCCTGAAGCTACTATTGTACAACTCAGTTTTGGAAATCGTCTTGGGGCTCTTATTGACACAgtgagggattctatatcctgttttggttttttgttctatcttatcgatgtgaaaaaactttagcttttcttgatttgtagcgtttttactatcagaatcagatgtaaacttgccttgttttcggcttatgaatcatatgtgtgtggcag

Basic information

species Arabidopsis thaliana
transcript AT5G04740.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G04740.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv13s0147g00220.t01 (Vitis vinifera), 5'ss of exon 3
TGTTCCAATGCCAATGGTTATGATAGACCAGGATGCTGACCCTGAAGCTACTATTGTACAACTCAGTTTTGGAAATCGTCTTGGGGCTCTTATTGACACAgtgagggattctatatcctgttttggttttttgttctatcttatcgatgtgaaaaaactttagcttttcttgatttgtagcgtttttactatcagaatcagatgtaaacttgccttgttttcggcttatgaatcatatgtgtgtggcag
||||||||  || |||||| ||||||| || ||| | ||  |||  || || |||||||| || ||||||||| |||| |||||||||||| ||||||| ||   | |     || |  ||       |||  |||| || ||          |||  | ||    ||||        |      | | | | || |     | |    || | |                                  
TGTTCCAACTCCGATGGTTCTGATAGATCAAGATTCAGATTCTGTTGCAACAATTGTACAGCTTAGTTTTGGAGATCGACTTGGGGCTCTTGTTGACACGgtagagtaactactagcaagtcaa----tttcattctgtccta----------aaagttataatgcttctcataagaaaaaaaggtcattgtgaggactctttattt-tttacat----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116444569|gb|EG487161.1|EG487161
EST:     GTACAACTCAGTTTTGGAAATCGTCTTGGGGCTCTTATTGACACA                         ATGCGGGCGCTGAAAGATTTGGGATTGGATGTAATAAAAGGAACTGTCTCA
genomic: GTACAACTCAGTTTTGGAAATCGTCTTGGGGCTCTTATTGACACAgtgagggatt ... tgtgtggcagATGCGGGCGCTGAAAGATTTGGGATTGGATGTAATAAAAGGAACTGTCTCA
EST: gi|125163800|gb|EL190570.1|EL190570
EST:     TGGAAATCGTCTTGGGGCTCTTATTGACACA                         ATGCGGGCGCTGAAAGATTTGGGATTGGATGTAATAAAAGGAACTGTCTCA
genomic: TGGAAATCGTCTTGGGGCTCTTATTGACACAgtgagggatt ... tgtgtggcagATGCGGGCGCTGAAAGATTTGGGATTGGATGTAATAAAAGGAACTGTCTCA
EST: gi|125213498|gb|EL228330.1|EL228330
EST:     CAACTCAGTTTTGGAAATCGTCTTGGGGCTCTTATTGACACA                         ATGCGGGCGCTGAAAGATTTGGGATTGGATGTAATAAAAGGAACTGTCTCA
genomic: CAACTCAGTTTTGGAAATCGTCTTGGGGCTCTTATTGACACAgtgagggatt ... tgtgtggcagATGCGGGCGCTGAAAGATTTGGGATTGGATGTAATAAAAGGAACTGTCTCA