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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCAGAGATGTTGTTGAGCAATATTATGGTAAAAAGTTTGAGCCTTCCCGTGAACTTCCAGAGTGGGAGTTCAAGAGTTACTTGGGATGGCATGAACAGgtattgttactaaaacccttttgaaaattgcgtcactttcagaactttatagcatggcttaatcaataaaatcttatcgtcgttgtgtactgatag

Basic information

species Arabidopsis thaliana
transcript AT5G04590.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G04590.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA11G09890.1 (Glycine max), 5'ss of exon 3
GTTCAGAGATGTTGTTGAGCAATATTATGGTAAAAAGTTTGAGCCTTCCCGTGAACTTCCAGAGTGGGAGTTCAAGAGTTACTTGGGATGGCATGAACAGgtattgttactaaaacccttttgaaaattgcgtcactttcagaactttatagcatggcttaatcaataaaatcttatcgtcgttgtgtactgatag-------------
||| |||  ||| ||||||||||||||||| || || ||||| |||| ||||| | | ||||| ||||| || || |||||  | || ||||||||||||||    |  ||  |     |  |  |||    ||| | || |  |||    || ||   |  |  |||| || || |  |  | |  |||   | |             
GTTTAGAAGTGTAGTTGAGCAATATTATGGCAAGAAATTTGAACCTTTCCGTGCATTGCCAGAATGGGAATTTAAAAGTTATCTTGGGTGGCATGAACAGgttggttctctgga-----tgagtgaataatatcaatgtctg--cttgcctgcttg-tatggttcataatattttttttttat-gcataccattcgagttatatagatt

upper sequence: AT5G04590.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA12G02200.1 (Glycine max), 5'ss of exon 3
GTTCAGAGATGTTGTTGAGCAATATTATGGTAAAAAGTTTGAGCCTTCCCGTGAACTTCCAGAGTGGGAGTTCAAGAGTTACTTGGGATGGCATGAACAGgtattgttactaaaacccttttgaaaattgcgtcactttcagaactttatagcatggcttaatcaataaaatcttatcgtcgttgtgtactgatag-----------
||| ||||  || ||||||||||||||||| || || ||||| |||| ||||| | | ||||| ||||| || || |||||  | || ||||||||||||||  || | ||  |      |  | |||  | |  ||||    || |  | | |||||  |   ||||   | || || | |   |  | | ||||           
GTTTAGAGGCGTAGTTGAGCAATATTATGGCAAGAAATTTGAACCTTTCCGTGCATTGCCAGAATGGGAATTTAAAAGTTATCTTGGGTGGCATGAACAGgt--tggttctctagatgagtgaataatatcatgccttt--atacctgcttgtatggccca--taatatctttttttcat-gcattccattcatagttatatggatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125011712|gb|EL083981.1|EL083981
EST:     CTTGGGATGGCATGAACAG                         GGAGATGGTGCATGGTTTTGTGGGCTTCACGTAGACAGTGGTCGTGTTGGA
genomic: CTTGGGATGGCATGAACAGgtattgttac ... gtactgatagGGAGATGGTGCATGGTTTTGTGGGCTTCACGTAGACAGTGGTCGTGTTGGA
EST: gi|86060691|gb|DR356448.1|DR356448
EST:     GTGAACTTCCAGAGTGGGAGTTCAAGAGTTACTTGGGATGGCATGAACAG                         GGAGATGGTGCATGGTTTTGTGGGCTTCACGTAGACAGTGGTCGTGTTGGA
genomic: GTGAACTTCCAGAGTGGGAGTTCAAGAGTTACTTGGGATGGCATGAACAGgtattgttac ... gtactgatagGGAGATGGTGCATGGTTTTGTGGGCTTCACGTAGACAGTGGTCGTGTTGGA
EST: gi|86060690|gb|DR356447.1|DR356447
EST:     GTGAACTTCCAGAGTGGGAGTTCAAGAGTTACTTGGGATGGCATGAACAG                         GGAGATGGTGCATGGTTTTGTGGGCTTCACGTAGACAGTGGTCGTGTTGGA
genomic: GTGAACTTCCAGAGTGGGAGTTCAAGAGTTACTTGGGATGGCATGAACAGgtattgttac ... gtactgatagGGAGATGGTGCATGGTTTTGTGGGCTTCACGTAGACAGTGGTCGTGTTGGA
EST: gi|164043839|gb|ES187374.1|ES187374
EST:     GTGAACTTCCAGAGTGGGAGTTCAAGAGTTACTTGGGATGGCATGAACAG                         GGAGATGGTGCATGGT
genomic: GTGAACTTCCAGAGTGGGAGTTCAAGAGTTACTTGGGATGGCATGAACAGgtattgttac ... gtactgatagGGAGATGGTGCATGGT