1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CATGCGGCAGTGGTTGTTGATGAGAAGCTCTACATTGTTGGTGGAAGCCGGAATGGCCGATACTTATCTGATGTCCAGgtaaattgtgtgtttcttctttgtgtctgtatcttccttttgttttcatgaatctgtggtgatttgaaaaaaactcaacttatcag
species | Arabidopsis thaliana |
transcript | AT5G04420.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCTACATTGTTGGTGGAAGCCGGAATGGCCGATACTTATCTGATGTCCAG GTGTTTGATCTTANAAGTTTGACTTGGTCTAGTTTGAAACTGAAAACTGAAEST: gi|86071590|gb|DR367347.1|DR367347
genomic: TCTACATTGTTGGTGGAAGCCGGAATGGCCGATACTTATCTGATGTCCAGgtaaattgtg ... aacttatcagGTGTTTGATCTTAGAAGTTTGACTTGGTCTAGTTTGAAACTGAAAACTGAA
EST: CTACATTGTTGGTGGAAGCCGGAATGGCCGATACTTTATCTGATGTCCAG GTGTTTGGATCTTANAAGTTTGACTTGGTCTAGTTTGAAACTGAAAACTGAEST: gi|86071588|gb|DR367345.1|DR367345
genomic: CTACATTGTTGGTGGAAGCCGGAATGGCCGATACTT-ATCTGATGTCCAGgtaaattgtg ... aacttatcagGTGTTTG-ATCTTAGAAGTTTGACTTGGTCTAGTTTGAAACTGAAAACTGA
EST: TCTACATTGTTGGTGGAAGCCGGAATGGCCGATACTTATCTGATGTCCAG GTGTTTGATCTTANAAGTTTGACTTGGTCTAGTTTGAAACTGAAAACTGAAEST: gi|86071587|gb|DR367344.1|DR367344
genomic: TCTACATTGTTGGTGGAAGCCGGAATGGCCGATACTTATCTGATGTCCAGgtaaattgtg ... aacttatcagGTGTTTGATCTTAGAAGTTTGACTTGGTCTAGTTTGAAACTGAAAACTGAA
EST: TCTACATTNTTGGTGGAAGCCGGAATGGCCGATNCTTATCTGATGTCCAG GTGTTTGATCTTANAAGTTCGACTTGGTCTAGTTTGAAACTGAAAACTGAAEST: gi|86071592|gb|DR367349.1|DR367349
genomic: TCTACATTGTTGGTGGAAGCCGGAATGGCCGATACTTATCTGATGTCCAGgtaaattgtg ... aacttatcagGTGTTTGATCTTAGAAGTTTGACTTGGTCTAGTTTGAAACTGAAAACTGAA
EST: CTACATTGTTGGTGGAAGCCGGAATGGCCGATACTTTATCTGATGTCCAG GTGTTTGGATCTTAGAAGTTTGACTTEST: gi|86071591|gb|DR367348.1|DR367348
genomic: CTACATTGTTGGTGGAAGCCGGAATGGCCGATACTT-ATCTGATGTCCAGgtaaattgtg ... aacttatcagGTGTTTG-ATCTTAGAAGTTTGACTT
EST: TCTACATTGTTGGNGGAAGCCGGAATGGCCGATACTTATCTGATGTCCAG GTGTTTGATCTTANAAGTTAGACTTGGTCTAGTTTGAAACTGAAAACTGAAEST: gi|86071585|gb|DR367342.1|DR367342
genomic: TCTACATTGTTGGTGGAAGCCGGAATGGCCGATACTTATCTGATGTCCAGgtaaattgtg ... aacttatcagGTGTTTGATCTTAGAAGTTTGACTTGGTCTAGTTTGAAACTGAAAACTGAA
EST: TCTACATTGTTGGTGGAAGCCGGAATGGCCGATACTTATCTGATGTCCAG GTGTTTGATCTTAEST: gi|86071582|gb|DR367339.1|DR367339
genomic: TCTACATTGTTGGTGGAAGCCGGAATGGCCGATACTTATCTGATGTCCAGgtaaattgtg ... aacttatcagGTGTTTGATCTTA
EST: TCTACATTGTTGGTGGAAGCCGGAATGGCCGATACTTATCTGATGTCCAG GTGTTTGATCTTANAAGTTTGACTTGGTCTAGTTTGAAACTGAAAACTGAA
genomic: TCTACATTGTTGGTGGAAGCCGGAATGGCCGATACTTATCTGATGTCCAGgtaaattgtg ... aacttatcagGTGTTTGATCTTAGAAGTTTGACTTGGTCTAGTTTGAAACTGAAAACTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGCGGCAGTGGTTGTTGATGAGAAGCTCTACATTGTTGGTGGAAGCCGGAATGGCCGATACTTATCTGATGTCCAGgtaaattgtgtgtttcttctttgtgtctgtatcttccttttgttttcatgaatctgtggtgatttgaaaaaaactcaacttatcag
- - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - TGGAAG