1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGATCACGGTAAAGGAAACTGCTAAGGTCGGGCCTCGTCCTGAGAAACCCATTGAGATATATGAGTTTGAAGGgtatgtatatataatgactgtgtgtttgattgttcatttagacacatttggtttctgttttcttttgatattgaatgaatgatttctttttctccatttccggtatgcgaatgaag
species | Arabidopsis thaliana |
transcript | AT5G03880.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAGGTCGGGCCTCGTCCTGAGAAACCCATTGAGATATATGAGTTTGAAGG CTGTCCCTTCTGCCGGAAGGTCEST: gi|116475228|gb|EG517820.1|EG517820
genomic: AAGGTCGGGCCTCGTCCTGAGAAACCCATTGAGATATATGAGTTTGAAGGgtatgtatat ... gcgaatgaagCTGTCCCTTCTGCCGGAAGGTC
EST: AAGGTCGGGCCTCGTCCTGAGAAACCCATTGAGATATATGAGTTTGAAGG CTGTCCCTTCTGCCGGAAGEST: gi|125219410|gb|EL233495.1|EL233495
genomic: AAGGTCGGGCCTCGTCCTGAGAAACCCATTGAGATATATGAGTTTGAAGGgtatgtatat ... gcgaatgaagCTGTCCCTTCTGCCGGAAG
EST: AAGGTCGGGCCTCGTCCTGAGAAACCCATTGAGATATATGAGTTTGAAGG CTGTCCCTTCTGCCGGAAGEST: gi|125305745|gb|EL319830.1|EL319830
genomic: AAGGTCGGGCCTCGTCCTGAGAAACCCATTGAGATATATGAGTTTGAAGGgtatgtatat ... gcgaatgaagCTGTCCCTTCTGCCGGAAG
EST: TATGAGTTTGAAGG CTGTCCCTTCTGCCGGAAGEST: gi|116475229|gb|EG517821.1|EG517821
genomic: TATGAGTTTGAAGGgtatgtatat ... gcgaatgaagCTGTCCCTTCTGCCGGAAG
EST: AAGGTCGGGCCTCGTCCTGAGAAACCCATTGAGATATATGAGTTTGAAGG CTGTCCCTTCTGCCGGAAGEST: gi|124758880|gb|EH849010.1|EH849010
genomic: AAGGTCGGGCCTCGTCCTGAGAAACCCATTGAGATATATGAGTTTGAAGGgtatgtatat ... gcgaatgaagCTGTCCCTTCTGCCGGAAG
EST: CGTCCTGAGAAACCCATTGAGATATATGAGTTTGAAGG CTGTCCCTTCTGCCGGAAGEST: gi|125289172|gb|EL303257.1|EL303257
genomic: CGTCCTGAGAAACCCATTGAGATATATGAGTTTGAAGGgtatgtatat ... gcgaatgaagCTGTCCCTTCTGCCGGAAG
EST: AAGGTCGGGCCTCGTCCTGAGAAACCCATTGAGATATATGAGTTTGAAGG CTGTCCCTTCTGCCGGAAGEST: gi|125279755|gb|EL293840.1|EL293840
genomic: AAGGTCGGGCCTCGTCCTGAGAAACCCATTGAGATATATGAGTTTGAAGGgtatgtatat ... gcgaatgaagCTGTCCCTTCTGCCGGAAG
EST: TTGAGATATATGAGTTTGAAGG CTGTCCCTTCTGCCGGAAGEST: gi|124738025|gb|EH829427.1|EH829427
genomic: TTGAGATATATGAGTTTGAAGGgtatgtatat ... gcgaatgaagCTGTCCCTTCTGCCGGAAG
EST: AGGTCGGGCCTCGTCCTGAGAAACCCATTGAGATATATGAAGTTTGAAGG CTGTCCCTTCTGCCGGAAGGTCAEST: gi|125108311|gb|EL161293.1|EL161293
genomic: AGGTCGGGCCTCGTCCTGAGAAACCCATTGAGATATATGA-GTTTGAAGGgtatgtatat ... gcgaatgaagCTGTCCCTTCTGCCGGAAGGTCA
EST: CCCATTGAGATATATGTAGTTTGAAGG CTGTCCCTTCTGCCGGAAGEST: gi|124933991|gb|EL011099.1|EL011099
genomic: CCCATTGAGATATATG-AGTTTGAAGGgtatgtatat ... gcgaatgaagCTGTCCCTTCTGCCGGAAG
EST: AAACCCATTGAGATATATGAGTTTGAAGG CTGTCCCTTCTGCCGGAAGEST: gi|116483992|gb|EG526584.1|EG526584
genomic: AAACCCATTGAGATATATGAGTTTGAAGGgtatgtatat ... gcgaatgaagCTGTCCCTTCTGCCGGAAG
EST: AAGGTCGGGCCTCGTCCTGAGAAACCCATTGAGATATATGAGTTTGAAGG CTGTCCCTTCTGCCGGAAG
genomic: AAGGTCGGGCCTCGTCCTGAGAAACCCATTGAGATATATGAGTTTGAAGGgtatgtatat ... gcgaatgaagCTGTCCCTTCTGCCGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATCACGGTAAAGGAAACTGCTAAGGTCGGGCCTCGTCCTGAGAAACCCATTGAGATATATGAGTTTGAAGGgtatgtatatataatgactgtgtgtttgattgttcatttagacacatttggtttctgttttcttttgatattgaatgaatgatttctttttctccatttccggtatgcgaatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG