1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCCTGGTGTTGTTCGTCGCGCTACACCTACTCGATTTGCTGGAAAGTCAAACGAAGAAGCCGCTGCTATCTTGATCCAGACTATATTTAGAGGTTATTTGgtatgtaattctactcttgcaattggctttattatctgcagaaacttaattccttcggaatttcgtatgagtttgaccgaggcacttgattttgtgtgaaggaagctgctttgttgagtataatcttattttgtgtaatatctgaaatacag
species | Arabidopsis thaliana |
transcript | AT5G03040.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACGAAGAAGCCGCTGCTATCTTGATCCAGACTATATTTAGAGGTTATTTG GCAAGGAGAGCGTTGCGGGCAATGAGGGGTTTGGTCAGACTTAAGTTATTGEST: gi|125296661|gb|EL310746.1|EL310746
genomic: ACGAAGAAGCCGCTGCTATCTTGATCCAGACTATATTTAGAGGTTATTTGgtatgtaatt ... tgaaatacagGCAAGGAGAGCGTTGCGGGCAATGAGGGGTTTGGTCAGACTTAAGTTATTG
EST: TTTAGAGGTTATTTG GCAAGGAGAGCGTTGCGGGCAATGAGGGGTTTGGTCAGACTTAAGTTATTGEST: gi|124796833|gb|EH886512.1|EH886512
genomic: TTTAGAGGTTATTTGgtatgtaatt ... tgaaatacagGCAAGGAGAGCGTTGCGGGCAATGAGGGGTTTGGTCAGACTTAAGTTATTG
EST: CGCTGCTATCTTGATCCAGACTATATTTAGAGGTTATTTG GCAAGGAGAGCGTTGCGGGCAATGAGGGGTTTGGTCAGACTTAAGTTATTG
genomic: CGCTGCTATCTTGATCCAGACTATATTTAGAGGTTATTTGgtatgtaatt ... tgaaatacagGCAAGGAGAGCGTTGCGGGCAATGAGGGGTTTGGTCAGACTTAAGTTATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTGGTGTTGTTCGTCGCGCTACACCTACTCGATTTGCTGGAAAGTCAAACGAAGAAGCCGCTGCTATCTTGATCCAGACTATATTTAGAGGTTATTTGgtatgtaattctactcttgcaattggctttattatctgcagaaacttaattccttcggaatttcgtatgagtttgaccgaggcacttgattttgtgtgaaggaagctgctttgttgagtataatcttattttgtgtaatatctgaaatacag
- - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT