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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGATGATGCAGAAGTATATAGGGTCTGATGTTACATCTATGGTTACTCTTCCTGTGATCATTTTTGAACCCATGACAATGTTGCAGAAAATGGCTGAGgtttgtggtcttagattttagattatatgaaagatcttttagcttctggtttctattgaacatgttttggtttctccatttgttgtctctgcag

Basic information

species Arabidopsis thaliana
transcript AT5G02100.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G02100.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os03g16690.1 (Oryza sativa), 5'ss of exon 3
GAAGATGATGCAGAAGTATATAGGGTCTGATGTTACATCTATGGTTACTCTTCCTGTGATCATTTTTGAACCCATGACAATGTTGCAGAAAATGGCTGAGgtttgtggtcttagattttagattata-tgaaagatcttttagcttctggtttctattgaacatgttttggtttctccatttgttgtctctgcag-----
|||||||||||| ||||| |||||| | |||||||||||  | || || ||||| || ||||||||||| || ||||||||| | ||||||||||| |||||||||  | ||| | |     ||| |  | |  | | | |          |  |  ||  |||     |  |  | | ||  ||  ||  ||       
GAAGATGATGCACAAGTACATAGGGGCAGATGTTACATCACTTGTGACACTTCCGGTCATCATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCAGAGgtttgtactgttaaactcacatttagagcgcagtagcctgtgttcgtcttctcatcctgtgcattggcagaatgttacgttcatttgcttagcgtagtat

upper sequence: AT5G02100.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G114126_T01 (Zea mays), 5'ss of exon 3
GAAGATGATGCAGAAGTATATAGGGTCTGATGTTACATCTATGGTTACTCTTCCTGTGATCATTTTTGAACCCATGACAATGTTGCAGAAAATGGCTGAGgtttgtg--gtcttagattttagattatatgaaagatcttttagcttctggtttctattgaacatgttt-tggtttctccat--ttgttgtctctgcag-
|||||||||||| ||||| ||||| || |||||||||||  | || || ||||| || || |||||||| || ||||||||| | |||||||||||||||||||||    | ||     ||||| |   ||| |  |    | ||         ||   | |  ||| |    ||  |  ||  |||| |||| |  |  
GAAGATGATGCACAAGTACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCTGAGgtttgtactatgttccgaattagacttcttgagatttacactggccatctacaactgaaggatgtgtctgcaattgtttgatccttgtcgtctttaaaaa

upper sequence: AT5G02100.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G174644_T01 (Zea mays), 5'ss of exon 3
GAAGATGATGCAGAAGTATATAGGGTCTGATGTTACATCTATGGTTACTCTTCCTGTGATCATTTTTGAACCCATGACAATGTTGCAGAAAATGGCTGAGgtttgtggtcttagattttagattatatgaaagatcttttagcttctggtttctattg--aacatgttttggtttctccatttgttg---tctctgcag--
|||||||||||| || || ||||| || |||||||||||  | || || ||||| || || |||||||| || ||||||||| | ||||||||||| |||||||||  | ||  ||| |    |  || | |  ||||     ||    |  | ||    |||        || ||| || |||||    ||||  | |  
GAAGATGATGCACAAATACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCCGAGgtttgtact-ttgtattatgttctgaattagacttcttgagatttacactgcccatctacaactgaaggatgtgtctgcaattgtttgattctcgacggct

upper sequence: AT5G02100.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: PP1S148_87V6.1 (Physcomitrella patens), 5'ss of exon 3
GAAGATGATGCAGAAGTATATAGGGTCTGATGTTACATCTATGGTTACTCTTCCTGTGATCATTTTTGAACCCATGACAATGTTGCAGAAAATGGCTGAGgtttgtggtcttagattttagattatatgaaagatcttttagcttctggtttctattg-aacatgttttggtttctccatttgttgt---ctctgcag--
||| |||||||| ||||| ||||| |||||  |||| || ||||| || ||||| || ||||| ||||| |||||||| | | | ||||| ||||||||||| | |  |      ||||            | |   ||| ||||     ||  | |  || ||| ||  | |   |    |||||     |||| |   
GAAAATGATGCACAAGTACATAGGTTCTGACATTACTTCAATGGTGACACTTCCAGTCATCATATTTGAGCCCATGACTACGCTTCAGAAGATGGCTGAGgtatttttttactttttttgtgcgtggccgcaaaatatttggctttaatctttgagtacaaaatgattctgctatccgtgatgttgcaaattctgtatac