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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatctgtttcttccccaaattcaattgtgtttttactttattgatatcgtcattgattaaactctgtttctctgttttattgatcttgattgacag

Basic information

species Arabidopsis thaliana
transcript AT4G40040.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G40040.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G176358_T01 (Zea mays), 5'ss of exon 3
GCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgca----atctgtttcttccccaaattcaattgtgtttttactttattgatatcgt-cattgattaaactctgtttctctgttttattgatcttgattgacag
|| || || ||||||||||| || ||||||||||| |||||||| || |||||||| ||||| |||||||| || ||||| |      |   || |||||     || |  | |   ||||  || |  || || || ||   | | | | |  |  |||  ||  |                 
GCAGCCCGGAAGTCTGCACCCACAACTGGAGGAGTGAAGAAGCCTCACCGTTACCGCCCAGGGACTGTTGCTCTTCGgtaggtggaagacaagtatcttcagttgatactctagatcttttggttgaa-gacattgtgcaaacagttagccc-ataactcctttccag----------------

upper sequence: AT4G40040.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: EFJ13396 (Selaginella moellendorffii), 5'ss of exon 2
GCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatctgtttcttccccaaattcaattgtgtttttactttattgatatcgtcattgattaaac-tctgtttctctgttttattgatcttgattgacag
|||||  | |||||||| || |||||||| || ||||| ||||||||||| ||||| ||||||||||||||||| ||||| |  ||  || ||| |  |    || ||      |  |   |  | ||    |   || ||   | ||||                              
GCTGCCAGGAAGTCTGCGCCTACCACTGGGGGTGTCAAAAAGCCCCATCGCTACCGCCCAGGAACTGTTGCACTCCGgtaagtcatgcgtctctccagcgttctcgatc-----tccagcgttctaatgcgatgcctgtttccgcatctgcag---------------------------

upper sequence: AT4G40040.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: EFJ11891 (Selaginella moellendorffii), 5'ss of exon 2
GCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatctgtttcttccccaaattcaattgtgtttttactttattgatatcgtcattgattaaactctgtttctctgttttattgatcttgattgacag
|||||  | |||||||| || |||||||| || ||||| ||||||||||| ||||| ||||||||||||||||| ||||| |  ||  || ||| |  |    || ||      |  |   |  | ||     |  ||  |     |   | | | |                      
GCTGCCAGGAAGTCTGCGCCTACCACTGGGGGTGTCAAAAAGCCCCATCGCTACCGCCCAGGAACTGTTGCACTCCGgtaagtcatgcgtctctccagcgttctcgatc-----tccagcgttctaatg----cgatgcctgtgtccgcatccgcag----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164097042|gb|ES174008.1|ES174008
EST:     GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
genomic: GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
EST: gi|116468465|gb|EG511057.1|EG511057
EST:     GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
genomic: GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
EST: gi|125217644|gb|EL231727.1|EL231727
EST:     ATCGTTACCGTCCAGGAACTGTTGCACTACG                         T
genomic: ATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacag-
EST: gi|125217644|gb|EL231727.1|EL231727
EST:     ATCGTTACCGTCCAGGAACTGTTGCACTACG                         T
genomic: ATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacag-
EST: gi|164222734|gb|ES033767.1|ES033767
EST:     GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
genomic: GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
EST: gi|301503181|gb|HO208721.1|HO208721
EST:     GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
genomic: GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
EST: gi|125303711|gb|EL317796.1|EL317796
EST:     GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAA
genomic: GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAA
EST: gi|125188761|gb|EL203715.1|EL203715
EST:     GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
genomic: GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
EST: gi|124931665|gb|EL009001.1|EL009001
EST:     CCCCATCGTTACCGCCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
genomic: CCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
EST: gi|125304390|gb|EL318475.1|EL318475
EST:     AACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
genomic: AACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
EST: gi|125194906|gb|EL209860.1|EL209860
EST:     AAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
genomic: AAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
EST: gi|125186023|gb|EL200977.1|EL200977
EST:     AGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGT
genomic: AGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGT
EST: gi|125297759|gb|EL311844.1|EL311844
EST:     CCCCATCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
genomic: CCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
EST: gi|125133928|gb|EL175133.1|EL175133
EST:     AACTGTTGCACTACG                         TGAAATTCGTGAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
genomic: AACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
EST: gi|301501157|gb|HO206697.1|HO206697
EST:     GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
genomic: GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
EST: gi|125324151|gb|EL338231.1|EL338231
EST:     AACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
genomic: AACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
EST: gi|125231401|gb|EL245486.1|EL245486
EST:     AGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
genomic: AGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
EST: gi|125260771|gb|EL274856.1|EL274856
EST:     TGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
genomic: TGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
EST: gi|164235728|gb|ES022365.1|ES022365
EST:     TCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAA
genomic: TCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAA
EST: gi|125046801|gb|EL119070.1|EL119070
EST:     GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTT
genomic: GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTT
EST: gi|116447859|gb|EG490451.1|EG490451
EST:     GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
genomic: GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
EST: gi|164087582|gb|ES064534.1|ES064534
EST:     GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGG
genomic: GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGG
EST: gi|163982641|gb|ES087431.1|ES087431
EST:     GGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGTCTCC
genomic: GGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAG-CTCC
EST: gi|125217501|gb|EL231584.1|EL231584
EST:     CCCATCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
genomic: CCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
EST: gi|125282606|gb|EL296691.1|EL296691
EST:     GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCT
genomic: GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCT
EST: gi|116483084|gb|EG525676.1|EG525676
EST:     GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
genomic: GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
EST: gi|124881290|gb|EH960192.1|EH960192
EST:     GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCA
genomic: GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCA
EST: gi|152035605|gb|BP859103.2|BP859103
EST:     GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
genomic: GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
EST: gi|164209759|gb|ES035240.1|ES035240
EST:     GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCC
genomic: GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCC
EST: gi|125211192|gb|EL226146.1|EL226146
EST:     CCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
genomic: CCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
EST: gi|116427491|gb|EG470083.1|EG470083
EST:     GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
genomic: GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
EST: gi|47829096|gb|CK118780.1|CK118780
EST:     GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
genomic: GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
EST: gi|164202893|gb|ES081184.1|ES081184
EST:     GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGT
genomic: GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGT
EST: gi|164209211|gb|ES156202.1|ES156202
EST:     GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTG
genomic: GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTG
EST: gi|164134640|gb|ES143340.1|ES143340
EST:     GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCA
genomic: GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCA
EST: gi|125258888|gb|EL272973.1|EL272973
EST:     GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
genomic: GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
EST: gi|164158148|gb|ES008877.1|ES008877
EST:     GAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
genomic: GAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
EST: gi|125113539|gb|EL164321.1|EL164321
EST:     AAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
genomic: AAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
EST: gi|125113771|gb|EL164468.1|EL164468
EST:     TCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
genomic: TCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
EST: gi|116468466|gb|EG511058.1|EG511058
EST:     GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
genomic: GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
EST: gi|301501881|gb|HO207421.1|HO207421
EST:     GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
genomic: GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
EST: gi|164203300|gb|ES025465.1|ES025465
EST:     GTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
genomic: GTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
EST: gi|116390647|gb|EG433239.1|EG433239
EST:     GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCA
genomic: GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCA
EST: gi|47830179|gb|CK119863.1|CK119863
EST:     GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
genomic: GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
EST: gi|125297785|gb|EL311870.1|EL311870
EST:     TCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
genomic: TCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
EST: gi|116427493|gb|EG470085.1|EG470085
EST:     GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
genomic: GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTGCTGATCAGGAAGCTCCC
EST: gi|125225952|gb|EL240037.1|EL240037
EST:     GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG                         TGAAATTCGTAAGTACCAGAAGAGTACCGAGTTG
genomic: GGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatc ... tgattgacagTGAAATTCGTAAGTACCAGAAGAGTACCGAGTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACGgtatgcaatctgtttcttccccaaattcaattgtgtttttactttattgatatcgtcattgattaaactctgtttctctgttttattgatcttgattgacag

- - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - -  AGAAGC