1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAAAAAGCTGAAGAGGTTAAACCGTATTTAAATGGACGATCGATGTATCTTGTTGgtcagtttctatgtctcatcctttgtttcagtattgtttagcttctcttgcattttggtagttgaacagtttcctcgtgaatgcgttag
species | Arabidopsis thaliana |
transcript | AT4G39540.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGCTGAAGAGGTTAAACCGTATTTAAATGGACGATCGATGTATCTTGTTG GTATGATGGGTTCCGGGAAAACGACTGTAGGGAAGEST: gi|19877812|gb|AU238643.1|AU238643
genomic: AGCTGAAGAGGTTAAACCGTATTTAAATGGACGATCGATGTATCTTGTTGgtcagtttct ... aatgcgttagGTATGATGGGTTCCGGGAAAACGACTGTAGGGAAG
EST: AGCTGAAGAGGTTAAACCGTATTTAAATGGACGATCGATGTATCTTGTTG GTATGATGGGTTCCGGGAAAACGACTGTAGGGGAAGATTATGGCAAGATCG
genomic: AGCTGAAGAGGTTAAACCGTATTTAAATGGACGATCGATGTATCTTGTTGgtcagtttct ... aatgcgttagGTATGATGGGTTCCGGGAAAACGACTGTAGGG-AAGATTATGGCAAGATCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAAAGCTGAAGAGGTTAAACCGTATTTAAATGGACGATCGATGTATCTTGTTGgtcagtttctatgtctcatcctttgtttcagtattgtttagcttctcttgcattttggtagttgaacagtttcctcgtgaatgcgttag
- - AGCTGA
- - - CTGAAG
- - - - TGAAGA
- - - - - AAGAGG