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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGTAATGCAGAGTTCACAGCTCAAAATAAACAAAGGCTTTTTTGCATCTGTTAATACACAAGAAGATAAACCCTTTGATTTCTTCCGCACTCTCTTTGgtttgtgtatattttgtcttttggttcatttgcaactattattttatgaatctcatgttctgactcatatacagtccttgtatctgaaaagtaatttctttttttattgctaatagtttggcatttttgctttgaatcggcagcttcaggtgtctaagtcttgttattcttatgttttggttttgatgatgcag

Basic information

species Arabidopsis thaliana
transcript AT4G39460.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86037549|gb|DR333304.1|DR333304
EST:     TGTTAATACACAAGAAGATAAACCCTTTGATTTCTTCCGCACTCTCTTTG                         AGGGGTTTATAGCAGGAGGTACAGCTGGAGTTGTAGTTGAAACAGCTTTAT
genomic: TGTTAATACACAAGAAGATAAACCCTTTGATTTCTTCCGCACTCTCTTTGgtttgtgtat ... gatgatgcagAGGGGTTTATAGCAGGAGGTACAGCTGGAGTTGTAGTTGAAACAGCTTTAT
EST: gi|86037541|gb|DR333296.1|DR333296
EST:     TGTTAATACACAAGAAGATAAACCCTTTGATTTCTTCCGCACTCTCTTTG                         AGGGGTTTATAGCAGGAGGTACAGCTGGAGTTGTAGTTGAAACAGCTTTAT
genomic: TGTTAATACACAAGAAGATAAACCCTTTGATTTCTTCCGCACTCTCTTTGgtttgtgtat ... gatgatgcagAGGGGTTTATAGCAGGAGGTACAGCTGGAGTTGTAGTTGAAACAGCTTTAT
EST: gi|86037552|gb|DR333307.1|DR333307
EST:     TGTTAATACACAAGAAGATAAACCCTTTGATTTCTTCCGCACTCTCTTTG                         AGAGGTTTATAGCAGGAGGTACAGCTGGAGTTGTAGTTGAAACAGCTTTAT
genomic: TGTTAATACACAAGAAGATAAACCCTTTGATTTCTTCCGCACTCTCTTTGgtttgtgtat ... gatgatgcagAGGGGTTTATAGCAGGAGGTACAGCTGGAGTTGTAGTTGAAACAGCTTTAT
EST: gi|86037540|gb|DR333295.1|DR333295
EST:     TGTTAATACACAAGAAGATAAACCCTTTGATTTCTTCCGCACTCTCTTTG                         AGGGGTTTATAGCAGGAGGTACAGCTGGAGTTGTAGTTGAAACAGCTTTAT
genomic: TGTTAATACACAAGAAGATAAACCCTTTGATTTCTTCCGCACTCTCTTTGgtttgtgtat ... gatgatgcagAGGGGTTTATAGCAGGAGGTACAGCTGGAGTTGTAGTTGAAACAGCTTTAT
EST: gi|86037532|gb|DR333287.1|DR333287
EST:     TGTTAATACACAAGAAGATAAACCCTTTGATTTCTTCCGCACTCTCTTTG                         AGAGGTTTATAGCAGGAGGTACAGCTGGAGTTGTAGTTGAAACAGCTTTAT
genomic: TGTTAATACACAAGAAGATAAACCCTTTGATTTCTTCCGCACTCTCTTTGgtttgtgtat ... gatgatgcagAGGGGTTTATAGCAGGAGGTACAGCTGGAGTTGTAGTTGAAACAGCTTTAT
EST: gi|86037555|gb|DR333310.1|DR333310
EST:     TGTTAATACACAAGAAGATAAACCCTTTGATTTCTTCCGCACTCTCTTTG                         AGGGGTTTATAGCAGGAGGTACAGCTGGAGTTGTAGTTGAAACAGCTTTAT
genomic: TGTTAATACACAAGAAGATAAACCCTTTGATTTCTTCCGCACTCTCTTTGgtttgtgtat ... gatgatgcagAGGGGTTTATAGCAGGAGGTACAGCTGGAGTTGTAGTTGAAACAGCTTTAT
EST: gi|125251215|gb|EL265300.1|EL265300
EST:     GTTAATACACAAGAAGAATAAACCCTTTGATTTCTTCCGCACTCTCTTTG                         AGGGGTTTATAGCAGGAGGTACAGCTGGAGTTGTAGTTGAAACAGCTTTTA
genomic: GTTAATACACAAGAAG-ATAAACCCTTTGATTTCTTCCGCACTCTCTTTGgtttgtgtat ... gatgatgcagAGGGGTTTATAGCAGGAGGTACAGCTGGAGTTGTAGTTGAAACAGCTTT-A
EST: gi|86037534|gb|DR333289.1|DR333289
EST:     TGTTAATACACAAGAAGATAAACCCTTTGATTTCTTCCGCACTCTCTTTG                         AGGGGTTTATAGCAGGAGGTACAGCTGGAGTTGTAGTTGAAACAGCTTTAT
genomic: TGTTAATACACAAGAAGATAAACCCTTTGATTTCTTCCGCACTCTCTTTGgtttgtgtat ... gatgatgcagAGGGGTTTATAGCAGGAGGTACAGCTGGAGTTGTAGTTGAAACAGCTTTAT
EST: gi|86037548|gb|DR333303.1|DR333303
EST:     TGTTAATACACAAGAAGATAAACCCTTTGATTTCTTCCGCACTCTCTTTG                         AGGGGTTTATAGCAGGAGGTACAGCTGGAGTTGTAGTTGAAACAGCTTTAT
genomic: TGTTAATACACAAGAAGATAAACCCTTTGATTTCTTCCGCACTCTCTTTGgtttgtgtat ... gatgatgcagAGGGGTTTATAGCAGGAGGTACAGCTGGAGTTGTAGTTGAAACAGCTTTAT
EST: gi|152033833|gb|BP817226.2|BP817226
EST:     TGTTAATACACAAGAAGATAAACCCTTTGATTTCTTCCGCACTCTCTTTG                         AGGGGTTTATAGCAGGAGGTACAGCTGGAGTTGTAGTTGAAACAGCTTTAT
genomic: TGTTAATACACAAGAAGATAAACCCTTTGATTTCTTCCGCACTCTCTTTGgtttgtgtat ... gatgatgcagAGGGGTTTATAGCAGGAGGTACAGCTGGAGTTGTAGTTGAAACAGCTTTAT
EST: gi|86037553|gb|DR333308.1|DR333308
EST:     TGTTAATACACAAGAAGATAAACCCTTTGATTTCTTCCGCACTCTCTTTG                         AGGGGTTTATAGCAGGAGGTACAGCTGGAGTTGTAGTTGAAACAGCTTTAT
genomic: TGTTAATACACAAGAAGATAAACCCTTTGATTTCTTCCGCACTCTCTTTGgtttgtgtat ... gatgatgcagAGGGGTTTATAGCAGGAGGTACAGCTGGAGTTGTAGTTGAAACAGCTTTAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGGTAATGCAGAGTTCACAGCTCAAAATAAACAAAGGCTTTTTTGCATCTGTTAATACACAAGAAGATAAACCCTTTGATTTCTTCCGCACTCTCTTTGgtttgtgtatattttgtcttttggttcatttgcaactattattttatgaatctcatgttctgactcatatacagtccttgtatctgaaaagtaatttctttttttattgctaatagtttggcatttttgctttgaatcggcagcttcaggtgtctaagtcttgttattcttatgttttggttttgatgatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG