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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTCCTTGGCCTGATCTTTTGAAATTCGTTTTGTTCGCTAACTTCTCTATCGTTGGGATGAACGTCAGTCTCATGTGGAATTCTGTTGGCTTCTACCAGgtctgtcctttttcatctcgatgcggatttacgttttccttcgtttaaagttttttttagtaagatcttgaaacgagtgtgttggcattgcag

Basic information

species Arabidopsis thaliana
transcript AT4G39390.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G39390.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os05g12490.1 (Oryza sativa), 5'ss of exon 3
GCTTCCTTG-GCCTGATCTTTTGAAATTCGTTTTGTTCGCTAACTTCTCTATCGTTGGGATGAACGTCAGTCTCATGTGGAATTCTGTTGGCTTCTACCAGgtctgtcctttttcatctcgatgcggatttacgttttccttc---gtttaaagttttttttagtaagatcttgaaacgagtgtgttggcattgcag
 ||| |  | ||| || ||  | ||||| || || || || ||| | || || ||||||||||| || ||| | |||||||| |||||||| |||||||||||        |   | ||   | |   || | |||  | ||     ||  | |  | |  || |  | || | |  |   | | |  |        
-CTTACCAGTGCCAGAACTAATAAAATTTGTCTTTTTTGCAAACCTATCAATTGTTGGGATGAATGTTAGTTTGATGTGGAACTCTGTTGGATTCTACCAGgtgaagaaagt---aactaagtcct--ttaatgttcacttttagaattggatgcatatactaatttgctcctcatgcc--tttttcag--------