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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGTTAAACCATCCATCAGTGTTGACTGTGGGATTCTTCGAGACTGCTATGAATCCTTTGCCATGTACTGTTTTGGTAGATACCTTGTTGCCTGCATTGgtatgaccattttcactcttttttatgtctaatattgattaggttccgcatcttgtagttctacctgtgaaacaaggataatcgcacaaacttactttctctttcccttgctctttgttctaaattgacttgtttaccag

Basic information

species Arabidopsis thaliana
transcript AT4G38360.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G38360.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv03s0038g03670.t01 (Vitis vinifera), 5'ss of exon 4
CTTGTTAAACCATCCATCAGTGTTGACTGTGGGATTCTTCGAGACTGCTATGAATCCTTTGCCATGTACTGTTTTGGTAGATACCTTGTTGCCTGCATTGgtatgaccattttcactcttttttatgtct-----aatattg-attagg-ttccgcatcttgtagttctacctgtgaaacaaggataatcgcacaaacttactttctctttcccttgctctttgttctaaattgacttgtttaccag
 | || || ||||| ||||||||||| ||||  || || || |||||||||||| ||||||||||||| || || || |||||||||||||| ||| | |||| | ||  ||| |     ||||||| ||     ||| ||  | | |  ||  || |||  ||  ||| | |   |      ||| ||   |  |  | |                                              
TTGGTGAATCCATCAATCAGTGTTGATTGTGCAATACTACGTGACTGCTATGAAGCCTTTGCCATGTATTGCTTCGGGAGATACCTTGTTGCTTGCTTGGgtaagccc-ctttaaagagcttttatgactgctgaaatcttacactggaatttggcttctaatatatctccattctatttctagattataatattatataa----------------------------------------------