1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AAGTGGACTTGAAGTTCATGATAAGAAAGGTATAGAATGCATGAGAGCTTCTGGAATACTTGCAGCTAGGGTTCGAGATTACGCTGGCACTTTGGTTAAGgtgaggaaagttttatactttctgtctcattttgaataatgctctattaattcatcataattttattcttttctatttggcag
species | Arabidopsis thaliana |
transcript | AT4G37040.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGGAATACTTGCAGCTAGGGTTCGAGATTACGCTGGCACTTTGGTTAAG CCAGGCGTAACCACTGATGAAATCGATGAAGCAGTTCACAATATGATTATTEST: gi|125202126|gb|EL217080.1|EL217080
genomic: CTGGAATACTTGCAGCTAGGGTTCGAGATTACGCTGGCACTTTGGTTAAGgtgaggaaag ... tatttggcagCCAGGCGTAACCACTGATGAAATCGATGAAGCAGTTCACAATATGATTATT
EST: CTGGAATACTTGCAGCTAGGGTTCGAGATTACGCTGGCACTTTGGTTAAG CCAGGCGTAACCEST: gi|125117086|gb|EL166367.1|EL166367
genomic: CTGGAATACTTGCAGCTAGGGTTCGAGATTACGCTGGCACTTTGGTTAAGgtgaggaaag ... tatttggcagCCAGGCGTAACC
EST: CGCTGGCACTTTGGTTAAG CCAGGCGTAACCACTGATGAAATCGATGAAGCAGTTCACAATATGATTATTEST: gi|19878343|gb|AU239174.1|AU239174
genomic: CGCTGGCACTTTGGTTAAGgtgaggaaag ... tatttggcagCCAGGCGTAACCACTGATGAAATCGATGAAGCAGTTCACAATATGATTATT
EST: CTGGAATACTTGCAGCTAGGGTTCGAGATTACGCTGGCACTTTGGTTAAG CCAGGCGTAACCACTGATGAAATCGATGAAGCAGTTCACAATATGATTATT
genomic: CTGGAATACTTGCAGCTAGGGTTCGAGATTACGCTGGCACTTTGGTTAAGgtgaggaaag ... tatttggcagCCAGGCGTAACCACTGATGAAATCGATGAAGCAGTTCACAATATGATTATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGTGGACTTGAAGTTCATGATAAGAAAGGTATAGAATGCATGAGAGCTTCTGGAATACTTGCAGCTAGGGTTCGAGATTACGCTGGCACTTTGGTTAAGgtgaggaaagttttatactttctgtctcattttgaataatgctctattaattcatcataattttattcttttctatttggcag
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