1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AGTGTACGTCCACATAAGAAAACGGAAGAGGAAGAAGAACTTGAAGAGTTTGTTAATTTTGAGCGTTATCGGGATTTGATTAAGCATCGGCGTAGAGGATgtcggtacctttttaactacattttcttccgataaatttgtttcttttttcgatctttgaatcaaatttaagggaaaaaacagtcgtagaatcgaaaattcgagtaactgagacaagggtcactgggataatgaacag
species | Arabidopsis thaliana |
transcript | AT4G36980.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGTTAATTTTGAGCGTTATCGGGATTTGATTAAGCATCGGCGTAGAGGAT TTTCTGATGAGGAGGGTTTGCAACATGTCCATCAAGAGCTCGAGGCCAAACEST: gi|116483420|gb|EG526012.1|EG526012
genomic: TGTTAATTTTGAGCGTTATCGGGATTTGATTAAGCATCGGCGTAGAGGATgtcggtacct ... taatgaacagTTTCTGATGAGGAGGGTTTGCAACATGTCCATCAAGAGCTCGAGGCCAAAC
EST: TGTTAATTTTGAGCGTTATCGGGATTTGATTAAGCATCGGCGTAGGGGAT TTTCTGATGAGGAGGGTTTGCAACATGTCCATCAAGAGCTCGAGGCCAAACEST: gi|86081605|gb|DR377362.1|DR377362
genomic: TGTTAATTTTGAGCGTTATCGGGATTTGATTAAGCATCGGCGTAGAGGATgtcggtacct ... taatgaacagTTTCTGATGAGGAGGGTTTGCAACATGTCCATCAAGAGCTCGAGGCCAAAC
EST: TGTTAATTTTGAGCGTTATCGGGATTTGATTAAGCATCGGCGTAGAGGAT TTTCTGATGAGGAGGGTTTGCAACATGTCCATCAAGAGCTCGAGGCCAAACEST: gi|164041138|gb|ES192552.1|ES192552
genomic: TGTTAATTTTGAGCGTTATCGGGATTTGATTAAGCATCGGCGTAGAGGATgtcggtacct ... taatgaacagTTTCTGATGAGGAGGGTTTGCAACATGTCCATCAAGAGCTCGAGGCCAAAC
EST: CGTTATCGGGATTTGATTAAGCATCGGCGTAGAGGAT TT-CTGATGAGGAGGGTTTGCAACATGTTCCATCAAGAGCTCGAGGCCAAAEST: gi|164176110|gb|ES100778.1|ES100778
genomic: CGTTATCGGGATTTGATTAAGCATCGGCGTAGAGGATgtcggtacct ... taatgaacagTTTCTGATGAGGAGGGTTTGCAACATGT-CCATCAAGAGCTCGAGGCCAAA
EST: TGTTAATTTTGAGCGTTATCGGGATTTGATTAAGCATCGGCGTAGAGGAT TTTCTGATGAGGAGEST: gi|164191907|gb|ES172293.1|ES172293
genomic: TGTTAATTTTGAGCGTTATCGGGATTTGATTAAGCATCGGCGTAGAGGATgtcggtacct ... taatgaacagTTTCTGATGAGGAG
EST: TTTGATTAAGCATCGGCGTAGAGGAT TTTCTGATGAGGAGGGTTTGCAACATGTCCATCAAGAGCTCGAGGCCAAAC
genomic: TTTGATTAAGCATCGGCGTAGAGGATgtcggtacct ... taatgaacagTTTCTGATGAGGAGGGTTTGCAACATGTCCATCAAGAGCTCGAGGCCAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTGTACGTCCACATAAGAAAACGGAAGAGGAAGAAGAACTTGAAGAGTTTGTTAATTTTGAGCGTTATCGGGATTTGATTAAGCATCGGCGTAGAGGATgtcggtacctttttaactacattttcttccgataaatttgtttcttttttcgatctttgaatcaaatttaagggaaaaaacagtcgtagaatcgaaaattcgagtaactgagacaagggtcactgggataatgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT