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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGATGTCATTGTTAGTCTGATAAGTGGTAGACTTGTGCGGGAACGAATAGGTCCAGCAATGCTAAGTGCGGTTCAAAGTCAGgtacagttttttattagcaatgtgttattggttccattatcagcaatgagatctcctctaatcatattcatctctcttctcactgatcag

Basic information

species Arabidopsis thaliana
transcript AT4G35840.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G35840.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv00s0264g00020.t01 (Vitis vinifera), 5'ss of exon 3
ATTGATGTCATTGTTAGTCTGATAAGTGGTAGACTTGTGCGGGAACGAATAGGTCCAGCAATGCTAAGTGCGGTTCAAAGTCAGgtacagttttttatta-gcaatgtgttattggttccattatcagcaatgagatctcctctaatcatattcatctctcttctcactgatcag
|||||||| ||||| || ||| ||||||||||||| || || ||  | || ||||| || ||||||||||| || ||||||||||||   || ||  | | | |||   |  ||   || |  || || ||||    |    ||  |    | |   |    | ||    | |||
ATTGATGTTATTGTAAGCCTGCTAAGTGGTAGACTCGTTCGTGAGAGGATCGGTCCTGCCATGCTAAGTGCAGTGCAAAGTCAGgtattattgttgctcaagtaataactagttaaatctaagataagaaatgt--ccattgctgtttgcttacgatttcaatgtcctcaaccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124718851|gb|EH810253.1|EH810253
EST:     ATAGGTCCAGCAATGCTAAGTGCGGTTCAAAGTCAG                         ATGGGAGCTGTGGATTCAACTTTCGAAGAGCTCTCGAGTATTTTCGATACC
genomic: ATAGGTCCAGCAATGCTAAGTGCGGTTCAAAGTCAGgtacagtttt ... cactgatcagATGGGAGCTGTGGATTCAACTTTCGAAGAGCTCTCGAGTATTTTCGATACC
EST: gi|86084376|gb|DR380135.1|DR380135
EST:     TTGTGCGGGAACGAATAGGTCCAGCGATGCTAAGTGCGGTTCAAAGTCAG                         ATGGGAGCTGTGGATTCAACTTTCGAAGAGCTCTCGAGTATTTTCGATACC
genomic: TTGTGCGGGAACGAATAGGTCCAGCAATGCTAAGTGCGGTTCAAAGTCAGgtacagtttt ... cactgatcagATGGGAGCTGTGGATTCAACTTTCGAAGAGCTCTCGAGTATTTTCGATACC
EST: gi|164067873|gb|ES122198.1|ES122198
EST:     TTGTGCGGGAACGAATAGGTCCAGCGATGCTAAGTGCGGTTCAAAGTCAG                         ATGGGAGCTGTGGATTCAACTTTTCGAAGAGCTCTCGAGTA
genomic: TTGTGCGGGAACGAATAGGTCCAGCAATGCTAAGTGCGGTTCAAAGTCAGgtacagtttt ... cactgatcagATGGGAGCTGTGGATTCAACTTT-CGAAGAGCTCTCGAGTA