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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTAAGCCGGAATCAGCTTCTGGGAGTTCAACTTCATCAGCTATGCCTGGCTTGAATTTCAATGCTTTTGATTTCTCTAATATGGCTAGTATTCTCAACgtaagttacctttgctgttagcacaattgaaaagttatcttctttgagtttttttttaattgataatggttttttttgtag

Basic information

species Arabidopsis thaliana
transcript AT4G35450.5
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86041566|gb|DR337321.1|DR337321
EST:     GCTTGAATTTCAATGCTTTTGATTTCTCTAATATGGCTAGTATTCTCAAC                         GATCCTAGCATCAGAGAAATGGCTGAGCAAATAGCTAAAGATCCTGCCTTT
genomic: GCTTGAATTTCAATGCTTTTGATTTCTCTAATATGGCTAGTATTCTCAACgtaagttacc ... ttttttgtagGATCCTAGCATCAGAGAAATGGCTGAGCAAATAGCTAAAGATCCTGCGTTT
EST: gi|86041544|gb|DR337299.1|DR337299
EST:     GCTTGAATTTCAATGCTTTTGATTTCTCTAATATGGCTAGTATTCTCAAC                         GATCCTAGCATCAGAGAAATGGCTGAGCAAATAGCTAAAGATCCTGCCTTT
genomic: GCTTGAATTTCAATGCTTTTGATTTCTCTAATATGGCTAGTATTCTCAACgtaagttacc ... ttttttgtagGATCCTAGCATCAGAGAAATGGCTGAGCAAATAGCTAAAGATCCTGCGTTT
EST: gi|124786574|gb|EH876253.1|EH876253
EST:     TATGGCTAGTATTCTCAAC                         GATCCTAGCATCAGAGAAATGGCTGAGCAAATAGCTAAAGATCCTGCGTTT
genomic: TATGGCTAGTATTCTCAACgtaagttacc ... ttttttgtagGATCCTAGCATCAGAGAAATGGCTGAGCAAATAGCTAAAGATCCTGCGTTT
EST: gi|124750583|gb|EH840713.1|EH840713
EST:     ATATGGCTAGTATTCTCAAC                         GATCCTAGCATCAGAGAAATGGCTGAGCAAATAGCTAAAGATCCTGCGTTT
genomic: ATATGGCTAGTATTCTCAACgtaagttacc ... ttttttgtagGATCCTAGCATCAGAGAAATGGCTGAGCAAATAGCTAAAGATCCTGCGTTT
EST: gi|152034676|gb|BP834471.2|BP834471
EST:     GCTTGAATTTCAATGCTTTTGATTTCTCTAATATGGCTAGTATTCTCAAC                         GATCCTAGCATCAGAGAAATGGCTGAGCAAATAGCTAAAGATCCTGCGTTT
genomic: GCTTGAATTTCAATGCTTTTGATTTCTCTAATATGGCTAGTATTCTCAACgtaagttacc ... ttttttgtagGATCCTAGCATCAGAGAAATGGCTGAGCAAATAGCTAAAGATCCTGCGTTT
EST: gi|125101748|gb|EL156764.1|EL156764
EST:     GCTAGTATTCTCAAC                         GATCCTAGCTTCAGAGAAATGGCTGAGCAAATAGCTAAAGATC
genomic: GCTAGTATTCTCAACgtaagttacc ... ttttttgtagGATCCTAGCATCAGAGAAATGGCTGAGCAAATAGCTAAAGATC
EST: gi|124874209|gb|EH955854.1|EH955854
EST:     CTTTTGATTTCTCTAATATGGCTAGTATTCTCAAC                         GATCCTAGCATCAGAGAAAATGGCTGAGCAAATAGCTAAAGATCCTGCGTT
genomic: CTTTTGATTTCTCTAATATGGCTAGTATTCTCAACgtaagttacc ... ttttttgtagGATCCTAGCATCAGAGAAA-TGGCTGAGCAAATAGCTAAAGATCCTGCGTT
EST: gi|125224035|gb|EL238120.1|EL238120
EST:     GCTTGAATTTCAATGCTTTTGATTTCTCTAATATGGCTAGTATTCTCAAC                         GATCCTAGCATCAGAGAAATGG
genomic: GCTTGAATTTCAATGCTTTTGATTTCTCTAATATGGCTAGTATTCTCAACgtaagttacc ... ttttttgtagGATCCTAGCATCAGAGAAATGG
EST: gi|86041556|gb|DR337311.1|DR337311
EST:     GCTTGAATTTCAATGCTTTTGATTTCTCTAATATGGCTAGTATTCTCAAC                         GATCCTAGCATCAGAGAAATGGCTGAGCAAATAGCTAAAGATCCTGCCTTT
genomic: GCTTGAATTTCAATGCTTTTGATTTCTCTAATATGGCTAGTATTCTCAACgtaagttacc ... ttttttgtagGATCCTAGCATCAGAGAAATGGCTGAGCAAATAGCTAAAGATCCTGCGTTT
EST: gi|86041563|gb|DR337318.1|DR337318
EST:     GCTTGAATTTCAATGCTTTTGATTTCTCTAATATGGCTAGTATTCTCAAC                         GATCCTAGCATCAGAGAAATGGCTGAGCAAATAGCTAAAGATCCTGCCTTT
genomic: GCTTGAATTTCAATGCTTTTGATTTCTCTAATATGGCTAGTATTCTCAACgtaagttacc ... ttttttgtagGATCCTAGCATCAGAGAAATGGCTGAGCAAATAGCTAAAGATCCTGCGTTT