Sequence
atgc intronic sequence ATGC exonic sequenceTGTCAACGCTTGCCTAGCACCTCTCTACTCTGTAGAAGGGATGCATGTAATATCCATTGAAGGAGTTGGTCATCGGAAACTTGGCTTGCACCCTCTTCAGgtggggttttacttcttccagattttttttttctcatttctgcgatcctaattctccctatttctctcag
Basic information
species | Arabidopsis thaliana |
transcript | AT4G34900.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G34900.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA15G03870.1 (Glycine max), 5'ss of exon 3
TGTCAACGCTTGCCTAGCACCTCTCTACTCTGTAGAAGGGATGCATGTAATATCCATTGAAGGAGTTGGTCATCGGAAACTTGGCTTGCACCCTCTTCAGgtggggttttacttcttccagattttttttttctcatttctgcgatcctaattctccctatttctctcag--------------------------------------------------------------------------------------------------------------------------------
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TATCAATGCTTGCTTAGCACCTCTATATTCTGTAGAAGGGATGCACGTGATTACAGTGGAGGGATTGGGAAGCTGCAAGCGTGGACTACACCCTGTTCAGgtgaca----gatgctcagactatcatcttttatcatgcttgtgtacttgttacatgctattgttttgagaatccattacttgtttgcttcccatggtgtaatgtgtttatctccgggccttggctatgagctttcttcttattttaaatttatatttacccatcaatactgtgaatttacccttgtaatctcttcag
upper sequence: AT4G34900.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA13G41520.1 (Glycine max), 5'ss of exon 4
TGTCAACGCTTGCCTAGCACCTCTCTACTCTGTAGAAGGGATGCATGTAATATCCATTGAAGGAGTTGGTCATCGGAAACTTGGCTTGCACCCTCTTCAGgtggggtttta-cttcttc-------cagattttttttttctcatttctgcgatcctaattctccctatttctctcag---------------------------------------------------------------------------------------------------------------
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TATCAATGCTTGCTTAGCACCTCTATATTCTGTAGAAGGCATGCATGTGATTACAGTGGAGGGATTGGGAAGCTGCAAGCGTGGACTACACCCTGTCCAGgtgacatactgtcttcttttatcatgcatatgtactagtattacttgctattgttttgagtatcctttacttgtttggttctcatggtgtaatgtgtttatctccaagccttgggatatgagctttcttcttattttaaatttatatttacccatcaatactttgaatttacccttgtaatctcttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19877239|gb|AU238070.1|AU238070EST: TATCCATTGAAGGAGTTGGTCATCGGAAACTTGGCTTGCACCCTCTTCAG GAGTCATTGGCATCTTCGCATGGTTCTCAATGTGGGTTTTGTACTCCCGGT
genomic: TATCCATTGAAGGAGTTGGTCATCGGAAACTTGGCTTGCACCCTCTTCAGgtggggtttt ... tttctctcagGAGTCATTGGCATCTTCGCATGGTTCTCAATGTGGGTTTTGTACTCCCGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTCAACGCTTGCCTAGCACCTCTCTACTCTGTAGAAGGGATGCATGTAATATCCATTGAAGGAGTTGGTCATCGGAAACTTGGCTTGCACCCTCTTCAGgtggggttttacttcttccagattttttttttctcatttctgcgatcctaattctccctatttctctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG