Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCTTCTCCAAGAAGGATTGGTATGACGTGAAGGCTCCTGGTTCTTTCACGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtcttatgtctttctattactatactggagaaaggttagagctttctaggttttgagtctatagttatctcatggcataggtcatttgctgaatg...

Basic information

species Arabidopsis thaliana
transcript AT4G34670.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G34670.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G013457_T01 (Zea mays), 5'ss of exon 2
TCCCTTCTCCAAGAAGGATTGGTATGACGTGAAGGCTCC-TGGTTCTTTCACGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtcttatgtctttctattactatactggagaaaggttagagctttctaggttt----tgagtctatagttatctcatggcataggtcatttgctgaatg
||||||||| |||||||| ||||||||| | ||||| || | | ||||    |  | | ||  ||||||||||||| || |||||||| |||||||||| ||||  || || | |   |||     | |    |    |       | ||| | |  |     || |  |||||   |   ||| | || ||     || | |  
TCCCTTCTCTAAGAAGGACTGGTATGACATCAAGGCCCCATCGGTCTTCAGTGTGC-GCAACATTGGGAAGACTCTCGTGTCCAGGACACAGGGTACCAGGgtatggttttctttaaatctcgaggtttttacgtaccacccctacgttttgtggtgtgaagatgggcgtatag--gttctatgtc-tatgtagaccgccgtag-

upper sequence: AT4G34670.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: PP1S179_15V6.1 (Physcomitrella patens), 5'ss of exon 2
TCCCTTCTCCAAGAAGGATTGGTATGACGTGAAGGCTCCTGGTTCTTTCACGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgta----------atgtcttatgtctttctattactatactgg---agaaaggttagagctttctaggttttgagtctatagttatctcatg-gcataggtcatttgctg--aatg--------------------------
||| |||||||||||||||||||||||| | |||||||||    | |||||| | | |    | |||||||| || ||  |||||||   ||||||||||||           ||   || | | ||| ||||  | |  | |   |  || ||| |   | |||  |   ||    ||| |||||    ||    |  || ||| |||    |||                          
TCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACACCTTCACGCAGAAGTCGTTGGGGAAGACCCTCGTCACCAGGACGGCGGGTACCAAGgtgcgagggtttgattgtttgtttgtttttatttatttgtttgtttattaaagttgggtttatctctgacctgg---tatggttatactgtgcatttctgtaattagcttctgatgagaggttttgtttgtttgggtttcag

upper sequence: AT4G34670.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: PP1S46_147V6.1 (Physcomitrella patens), 5'ss of exon 2
TCCCTTCTCCAAGAAGGATTGGTATGACGTGAAGGCTCCTGGTTCTTTCACGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtcttatg--tctttctattactatactggagaaaggttagagctttct-------aggttttgagtcta--tagttatctcatggcataggtc-atttgctgaatg-----------------------------------------------
|||||||||||||||||||||||||||| | ||||| ||   | |||||||  | | |||  | || |||||||| ||  |||||||   ||| || |||||   |  |||||  ||| ||| |  || |  | | |      |   || | |         || ||||| |  |  | |  || | |||  | || |  ||  |||   |                                                
TCCCTTCTCCAAGAAGGATTGGTATGACATCAAGGCACCCAATACTTTCACTCAAAAGAACTTGGGAAAGACTCTCGTGACCAGGACCGCGGGAACGAAGgtggggggttatgcttctctctctcgctctgtttgtgtgtatctctcgcctccgtcccgtggggatttgattgaagttggacattt-atgagagagatggatacgcttttttcttttgtgaagttgtacacggaactgacgcgggtttggatgcgacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164133731|gb|EL996868.1|EL996868
EST:     CGAACGGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTT
EST: gi|86054275|gb|DR350032.1|DR350032
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054239|gb|DR349996.1|DR349996
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054283|gb|DR350040.1|DR350040
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054294|gb|DR350051.1|DR350051
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054257|gb|DR350014.1|DR350014
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054264|gb|DR350021.1|DR350021
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054274|gb|DR350031.1|DR350031
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054293|gb|DR350050.1|DR350050
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGAGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054267|gb|DR350024.1|DR350024
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054247|gb|DR350004.1|DR350004
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054252|gb|DR350009.1|DR350009
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054250|gb|DR350007.1|DR350007
EST:     CGAACAGGAATGTTGGGAAGACTCTWGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCT-NNGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054270|gb|DR350027.1|DR350027
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTAC-AAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTTGAGGTTTCTCTTGCTGA
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTT-GAGGTTTCTCTTGCTGA
EST: gi|86054281|gb|DR350038.1|DR350038
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054284|gb|DR350041.1|DR350041
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTMCCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054242|gb|DR349999.1|DR349999
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054292|gb|DR350049.1|DR350049
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTAC-AAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGGTTTSTSTTGCTGA
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGG-TTTCTCTTGCTGA
EST: gi|164000474|gb|ES138299.1|ES138299
EST:     ACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: ACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054272|gb|DR350029.1|DR350029
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054277|gb|DR350034.1|DR350034
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGAGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054289|gb|DR350046.1|DR350046
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054249|gb|DR350006.1|DR350006
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054259|gb|DR350016.1|DR350016
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054233|gb|DR349990.1|DR349990
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTAC-AAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054296|gb|DR350053.1|DR350053
EST:     GAACAGGAATGTTGGGAAGACTGCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: GAACAGGAATGTTGGGAAGACT-CTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054240|gb|DR349997.1|DR349997
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054254|gb|DR350011.1|DR350011
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGSSTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054285|gb|DR350042.1|DR350042
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054280|gb|DR350037.1|DR350037
EST:     CGAACAGGAATGTTGGGAVGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054241|gb|DR349998.1|DR349998
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|164123534|gb|ES121581.1|ES121581
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTAGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCT-GAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCT
EST: gi|86054263|gb|DR350020.1|DR350020
EST:     CTAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054256|gb|DR350013.1|DR350013
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054282|gb|DR350039.1|DR350039
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054271|gb|DR350028.1|DR350028
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054258|gb|DR350015.1|DR350015
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054287|gb|DR350044.1|DR350044
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054253|gb|DR350010.1|DR350010
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054295|gb|DR350052.1|DR350052
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054279|gb|DR350036.1|DR350036
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054236|gb|DR349993.1|DR349993
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054297|gb|DR350054.1|DR350054
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054288|gb|DR350045.1|DR350045
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054251|gb|DR350008.1|DR350008
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|164029814|gb|ES088564.1|ES088564
EST:     GGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: GGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054248|gb|DR350005.1|DR350005
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054266|gb|DR350023.1|DR350023
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054278|gb|DR350035.1|DR350035
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054290|gb|DR350047.1|DR350047
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054243|gb|DR350000.1|DR350000
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054238|gb|DR349995.1|DR349995
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054269|gb|DR350026.1|DR350026
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054246|gb|DR350003.1|DR350003
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054273|gb|DR350030.1|DR350030
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054265|gb|DR350022.1|DR350022
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054268|gb|DR350025.1|DR350025
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054235|gb|DR349992.1|DR349992
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054244|gb|DR350001.1|DR350001
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054260|gb|DR350017.1|DR350017
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054237|gb|DR349994.1|DR349994
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054262|gb|DR350019.1|DR350019
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
EST: gi|86054234|gb|DR349991.1|DR349991
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTGCCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTNVTCTTGCTGA
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTC-TCTTGCTGA
EST: gi|86054286|gb|DR350043.1|DR350043
EST:     CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAG                         ATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT
genomic: CGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtctt ... atttaaacagATTGCCTCTGAGGGACTGAAACACAGGGTGTTTGAGGTTTCTCTTGCTGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCCTTCTCCAAGAAGGATTGGTATGACGTGAAGGCTCCTGGTTCTTTCACGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGgtaatgtcttatgtctttctattactatactggagaaaggttagagctttctaggttttgagtctatagttatctcatggcataggtcatttgctgaatg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggagaaa