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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGATGACACAAGCGTACCAGTGGAGATCAAAGTTCCAATTCTGATAGCTTTCCACCGTCATATATACGATGGTGACTGGCATTTTTCATgtaagtaataagaagagacttttcacatcttaacctttcagatgaaattcttttcttttaacttaattactcttcattcaattttag

Basic information

species Arabidopsis thaliana
transcript AT4G34650.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G34650.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA11G11960.3 (Glycine max), 5'ss of exon 3
AGGATGACACAAGCGTACCAGTGGAGATCAAAGTTCCAATTCTGATAGCTTTCCACCGTCATATATACGATGGTGACTGGCATTTTTCATgtaagtaataagaaga---gacttttcacatcttaa----cctttcagatgaaattcttttct-tttaacttaattactcttcattcaattt-tag----
||||||| || ||| ||  |   ||  |||| || ||||| |||||||| || ||||||||||| || ||| |||| ||||| ||||||||| ||| |             ||||||   | ||||      ||   |   | ||    |||  |  || || |  |  |||| | |||| | | |    
AGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCATgtgagtgagtcattctttttgcttttctttttttaaaataatttcttgccaagataagattcaatacaatttgaacaaccttcttccaatctgttgtttt

upper sequence: AT4G34650.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA12G04220.3 (Glycine max), 5'ss of exon 3
AGGATGACACAAGCGTACCAGTGGAGATCAAAGTTCCAATTCTGATAGCTTTCCACCGTCATATATACGATGGTGACTGGCATTTTTCATgtaagtaataagaagagacttttcacatcttaacctttcagatgaaattcttttcttttaacttaattactcttcattcaattttag----------------------
||||||| || ||| ||  |   ||  |||| || ||||| |||||||| || ||||||||||| || ||| |||| ||||| ||||||||| |||         |  |||||    | ||    ||| | || |     |||  |   ||  |||| |   |  || |||||| |                       
AGGATGATACTAGCATAGAAACAGATGTCAAGGTGCCAATACTGATAGCCTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCATgtgagtgt----gtcattcttttttgcttttctttttttaaataa-----tttcttgccaagataataagattcaatacaatttgaataaacttcttcaatctgttgtt

upper sequence: AT4G34650.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv03s0038g00450.t01 (Vitis vinifera), 5'ss of exon 3
AGGATGACACAAGCGTACCAGTGGAGATCAAAGTTCCAATTCTGATAGCTTTCCACCGTCATATATACGATGGTGACTGGCATTTTTCATgtaagtaataagaagagacttttcac-atcttaacctttcagatgaaattcttttcttttaacttaattactcttcattca-attttag-------------
||||||| |||||| | |     ||  ||||||| || |||||||||||||| || ||||||||||| ||  |||||||||||||| ||||| || |  | |||    ||||||||  | ||    | ||   || ||   | ||  ||     |  || || |   | || |   | |             
AGGATGATACAAGCATTCGTACAGATGTCAAAGTGCCTATTCTGATAGCTTTTCATCGTCATATATATGACCGTGACTGGCATTTTGCATgtgaggatcatgaac--tcttttcaccgtatttgtttctcttttgcaaccatatttcttatttgtggtttctttggttccacaaactggagaatactgtttt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86060546|gb|DR356303.1|DR356303
EST:     TCTGATAGCTTTCCACCGTCATATATACGATGGTGACTGGCATTTTTCAT                         GTGGTACAAAAGAGTATAAACTTCTAATGGACCAATTTCACCATGTTTCTG
genomic: TCTGATAGCTTTCCACCGTCATATATACGATGGTGACTGGCATTTTTCATgtaagtaata ... tcaattttagGTGGTACAAAAGAGTATAAACTTCTAATGGACCAATTTCACCATGTTTCTG
EST: gi|86047504|gb|DR343259.1|DR343259
EST:     TCTGATAGCTTTCCACCGTCATATATACGATGGTGACTGGCATTTTTCAT                         GTGGTACAAAAGAGTATAAACTTCTAATGGACCAATTTCACCATGTTTCTG
genomic: TCTGATAGCTTTCCACCGTCATATATACGATGGTGACTGGCATTTTTCATgtaagtaata ... tcaattttagGTGGTACAAAAGAGTATAAACTTCTAATGGACCAATTTCACCATGTTTCTG