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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGATGATACTAGCATACCAACTGATGAAAAGGTTCCCATCCTGATAGCTTTTCACCGGCACATATACGATACTGATTGGCATTATTCATgcaagtctgaagagtctcttaacatcttcatctttcacattccattaatctttgactgtctaactgacaaattttacttgttcaactttag

Basic information

species Arabidopsis thaliana
transcript AT4G34640.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124863686|gb|EH948123.1|EH948123
EST:     CACCGGCACATATACGATACTGATTGGCATTATTCAT                         GTGGTACGAAGGAGTACAAGATTCTAATGGACCAATT-CACCATGTTTCTG
genomic: CACCGGCACATATACGATACTGATTGGCATTATTCATgcaagtctga ... tcaactttagGTGGTACGAAGGAGTACAAGATTCTAATGGACCAATTTCACCATGTTTCTG
EST: gi|164100665|gb|ES135390.1|ES135390
EST:     CCTGATAGCTTTTCACCGGCACATATACGATACTGATTGGCATTATTCAT                         GTGGTACGAAGGAGTACAAGATTCTAA
genomic: CCTGATAGCTTTTCACCGGCACATATACGATACTGATTGGCATTATTCATgcaagtctga ... tcaactttagGTGGTACGAAGGAGTACAAGATTCTAA