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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAAGCAGTGGTTTGGATATATGGCTTGGTCGTGGCGCCATGGTTGGTTTTGCAGTTGCCATTACTGTTGAGATTTCCACTGGAAAAGGACTTCTTGAGgtaatcaaacatcataactgatattgttgcttatataaaagttgaaagtttgagaaatgtaagagaagtagaataacttaagatttgatttgtcttcttatttcag

Basic information

species Arabidopsis thaliana
transcript AT4G34190.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G34190.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA20G26560.2 (Glycine max), 5'ss of exon 3
AGGAAGCAGTGGTTTGGATATATGGCTTGGTCGTGGCGCCATGGTTGGTTTTGCAGTTGCCATTACTGTTGAGATTTCCACTGGAAAAGGACTTCTTGAGgta-atcaaac-atcataactgatattgttgcttatataaaagttgaaagtttgagaaatgtaagagaag-tagaataacttaagatttgatttgtcttcttatttcag
|  | | | |||| ||||| | ||||| ||  |    ||||||||||| |||||||| || || |||||||| ||||| |||||||| ||||| || |||||| || | || ||  ||  ||  | |||||   || | ||| || |  || |    || | || |  || ||||| || ||  |  |  ||   | | |         
ACAAGGGAATGGTCTGGATGTGTGGCTAGGCAGACTAGCCATGGTTGGCTTTGCAGTAGCGATCACTGTTGAAATTTCTACTGGAAAGGGACTCCTAGAGgtatatgatactattgtacgtgtgaatgttgggaatttcaaaattcagtgtgtttccaagggaacattagctagaagaatttttgcat--atccatttacca-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125015428|gb|EL087697.1|EL087697
EST:     TTGCAGTTGCCATTACTGTTGAGATTTCCACTGGAAAAGGACTTCTTGAG                         AATTTTGGAGTAGCAAGT
genomic: TTGCAGTTGCCATTACTGTTGAGATTTCCACTGGAAAAGGACTTCTTGAGgtaatcaaac ... cttatttcagAATTTTGGAGTAGCAAGT
EST: gi|125009725|gb|EL081994.1|EL081994
EST:     TTACTGTTGAGATTTCCACTGGAAAAGGACTTCTTGAG                         AATTTTGGAGTAGCAAGTCCATTGCCTACGGTTGCTTTAGCTGTTACAGCA
genomic: TTACTGTTGAGATTTCCACTGGAAAAGGACTTCTTGAGgtaatcaaac ... cttatttcagAATTTTGGAGTAGCAAGTCCATTGCCTACGGTTGCTTTAGCTGTTACAGCA
EST: gi|125259801|gb|EL273886.1|EL273886
EST:     TTGCAGTTGCCATTACTGTTGAGATTTCCACTGGAAAAGGACTTCTTGAG                         AATTTTGGAGTAGCAAGTCCATTGCCTACGGTTGCTTTAG
genomic: TTGCAGTTGCCATTACTGTTGAGATTTCCACTGGAAAAGGACTTCTTGAGgtaatcaaac ... cttatttcagAATTTTGGAGTAGCAAGTCCATTGCCTACGGTTGCTTTAG
EST: gi|125287811|gb|EL301896.1|EL301896
EST:     GCAGTTGCCATTACTGTTGAGAGTTTCCACTGGAAAAGGAACTTCTTGAG                         AATTTTGGAGTAGCAAGTCCATTGCCTACGGTTGCTTTAGCTGTTACAGCA
genomic: GCAGTTGCCATTACTGTTGAGA-TTTCCACTGGAAAAGG-ACTTCTTGAGgtaatcaaac ... cttatttcagAATTTTGGAGTAGCAAGTCCATTGCCTACGGTTGCTTTAGCTGTTACAGCA
EST: gi|124944103|gb|EL020238.1|EL020238
EST:     TTGCAGTTGCCATTACTGTTGAGATTTCCACTGGAAAAGGACTTCTTGAG                         AATTTTGGAGTAGCAAGT
genomic: TTGCAGTTGCCATTACTGTTGAGATTTCCACTGGAAAAGGACTTCTTGAGgtaatcaaac ... cttatttcagAATTTTGGAGTAGCAAGT
EST: gi|125321851|gb|EL335936.1|EL335936
EST:     TTGCAGTTGCCATTACTGTTGAGATTTCCACTGGAAAAGGACTTCTTGAG                         AATTTTGGAGTAGCAAGTCCA
genomic: TTGCAGTTGCCATTACTGTTGAGATTTCCACTGGAAAAGGACTTCTTGAGgtaatcaaac ... cttatttcagAATTTTGGAGTAGCAAGTCCA
EST: gi|116429103|gb|EG471695.1|EG471695
EST:     TTGCAGTTGCCATTACTGTTGAGATTTCCACTGGAAAAGGACTTCTTGAG                         AATTTTGGAGTAGCAAGTCCATTGCCTACGGTTGCTTTAGCTGTTACAGCA
genomic: TTGCAGTTGCCATTACTGTTGAGATTTCCACTGGAAAAGGACTTCTTGAGgtaatcaaac ... cttatttcagAATTTTGGAGTAGCAAGTCCATTGCCTACGGTTGCTTTAGCTGTTACAGCA
EST: gi|164178860|gb|ES213291.1|ES213291
EST:     AAAGGACTTCTTGAG                         A
genomic: AAAGGACTTCTTGAGgtaatcaaac ... cttatttcag-
EST: gi|164178860|gb|ES213291.1|ES213291
EST:     AAAGGACTTCTTGAG                         A
genomic: AAAGGACTTCTTGAGgtaatcaaac ... cttatttcag-
EST: gi|125054225|gb|EL125028.1|EL125028
EST:     TTGCAGTTGCCATTACTGTTGAGATTTCCACTGGAAAAGGACTTCTTGAG                         AATTTTGGAGTAGCAAGTCCATTGCCTACGGTTGCTTTAGCTGTTAC
genomic: TTGCAGTTGCCATTACTGTTGAGATTTCCACTGGAAAAGGACTTCTTGAGgtaatcaaac ... cttatttcagAATTTTGGAGTAGCAAGTCCATTGCCTACGGTTGCTTTAGCTGTTAC
EST: gi|124765634|gb|EH855764.1|EH855764
EST:     TTGCAGTTGCCATTACTGTTGAGATTTCCACTGGAAAAGGACTTCTTGAG                         AATTTTGGAGTAGCAAGTCCATTGCCTACGGTTGCTTTAGCTGTTACAG
genomic: TTGCAGTTGCCATTACTGTTGAGATTTCCACTGGAAAAGGACTTCTTGAGgtaatcaaac ... cttatttcagAATTTTGGAGTAGCAAGTCCATTGCCTACGGTTGCTTTAGCTGTTACAG
EST: gi|163975262|gb|ES111744.1|ES111744
EST:     AAAGGACTTCTTGAG                         AATTTTGGAGTAGCAAGTCCATTGCCTACGGTTGCTTTAGCTGTTACAGCA
genomic: AAAGGACTTCTTGAGgtaatcaaac ... cttatttcagAATTTTGGAGTAGCAAGTCCATTGCCTACGGTTGCTTTAGCTGTTACAGCA
EST: gi|125041956|gb|EL114225.1|EL114225
EST:     ATTTCCACTGGAAAAGGACTTCTTGAG                         AATTTTGGTAGTAGCAAGTCCATTGCCTACGGTTGCTTTAGCTGTTACAGC
genomic: ATTTCCACTGGAAAAGGACTTCTTGAGgtaatcaaac ... cttatttcagAATTTTGG-AGTAGCAAGTCCATTGCCTACGGTTGCTTTAGCTGTTACAGC
EST: gi|47831402|gb|CK121086.1|CK121086
EST:     TTGCAGTTGCCATTACTGTTGAGATTTCCACTGGAAAAGGACTTCTTGAG                         AATTTTGGAGTAGCAAGTCCATTGCCTACGGTTGCTTTAGCTGTTACAGCA
genomic: TTGCAGTTGCCATTACTGTTGAGATTTCCACTGGAAAAGGACTTCTTGAGgtaatcaaac ... cttatttcagAATTTTGGAGTAGCAAGTCCATTGCCTACGGTTGCTTTAGCTGTTACAGCA