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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCACTGCTGGTGGTGCCTACATTCCTGCCATGGCTGATGAAAGTGTAATGGTCAAAGGGAATGGTACCATATTTTTAGCAGGACCGCCACTTGTCAAGgtcaattttctcaagttactttctctctctctctctctcgttctagtcttaagtagtttcttgagaatctaacgctaaatgaaaaagcttttgaacag

Basic information

species Arabidopsis thaliana
transcript AT4G34030.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G34030.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os08g32850.2 (Oryza sativa), 5'ss of exon 2
CTGCACTGCTGGTGGTGCCTACATTCCTGCCATGGCTGATGAAAGTGTAATGGTCAAAGGGAATGGTACCATATTTTTAGCAGGACCGCCACTTGTCAAGgtcaattttctcaagttactttctctctctctctctctcgttctagtcttaagtagtttcttgagaa---tctaacgctaaatgaaaaagcttttgaacag---
 || || ||||||||||| || ||||| || ||||||||||| |||||||| || || || ||||| || |||||| |||| || || |||||||| ||||| | | |||||    | |  | |   |   ||  | |   | | |  |   ||    |||||||||   || || | |   | |||  || | || ||     
TTGTACCGCTGGTGGTGCTTATATTCCGGCAATGGCTGATGAGAGTGTAATAGTAAAGGGAAATGGAACAATATTTCTAGCTGGTCCACCACTTGTAAAGgtgagtgttctctgcctgccattttgattattcattttatgttttgcat--ggtgagatcttgagaactatccaatgttt--tcaaatcgcctatgcaccaata

upper sequence: AT4G34030.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G702490_T01 (Zea mays), 5'ss of exon 2
CTGCACTGCTGGTGGTGCCTACATTCCTGCCATGGCTGATGAAAGTGTAATGGTCAAAGGGAATGGTACCATATTTTTAGCAGGACCGCCACTTGTCAAGgtca--attttctcaagttactttctctctctctctctctcgttctagtcttaagt---agtttcttgagaatctaacgctaaatgaaaaagcttttgaacag
 |||||||||||||| || || |||||||| ||||| ||||| |||||||| || || || ||||| || |||||| |||| || || |||||||| |||||||  || ||||  |   | ||| | | | | |||   |  |   | | |   ||   | | |||     ||  ||       |      || |    |   
TTGCACTGCTGGTGGGGCATATATTCCTGCAATGGCGGATGAGAGTGTAATAGTTAAGGGAAATGGGACTATATTTCTAGCGGGTCCACCACTTGTAAAGgtcagaatattctggaaccattttgtttattt-tctaaatgataaaattttggtgtctaaatctctaatatattaaagcaccggtcgtcccgcgtcaatat--

upper sequence: AT4G34030.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA02G14860.1 (Glycine max), 5'ss of exon 2
CTGCACTGCTGGTGGTGCCTACATTCCTGCCATGGCTGATGAAAGTGTAATGGTCAAAGGGAATGGTACCATATTTTTAGCAGGACCGCCACTTGTCAAGgtcaattttctcaagttactttctctctctctctctctcgttctagtcttaagtagtttcttgagaatctaacgctaaatgaaaaagcttttgaacag-----------------------------------------------------------------------------------
 |||||||||||||| || || |||||||| ||||||||||||||||| |||||||| || ||||||||||| ||||||||||| || || ||||| ||||| |  | |  | | |    | ||| |    | | |    |  || |||   |   |||||      |  ||   ||||  |     ||||| ||                                                                                      
TTGCACTGCTGGTGGCGCTTATATTCCTGCTATGGCTGATGAAAGTGTGATGGTCAAGGGAAATGGTACCATTTTTTTAGCAGGGCCACCTCTTGTTAAGgttagctctagctactcttgtgctc-caaaatgttttgtatgataatctctggctatttctatgttcttgaattttaaaatatgtttcttttaaatttcaatattttgacattaacaatgtgttgatgtattttttatgcatttatgaccaaaattaaaccttaattaaatgattttttag

upper sequence: AT4G34030.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA07G33620.1 (Glycine max), 5'ss of exon 2
CTGCACTGCTGGTGGTGCCTACATTCCTGCCATGGCTGATGAAAGTGTAATGGTCAAAGGGAATGGTACCATATTTTTAGCAGGACCGCCACTTGTCAAGgtcaattttctcaagttactttctctctctctctctct-cgttctagtcttaagtagtttcttgagaatctaacgctaaatgaaaaagcttttgaacag----------------------------------------------------------------------------------
 |||||||||||||| || || |||||||| ||||| ||||||||||| |||||||| || ||||| ||||| ||||||||||| || || ||||| |||||    || ||| || |||| |    ||||      ||  ||  || |||   |   |||||      |  |    ||||        ||||| ||                                                                                     
TTGCACTGCTGGTGGCGCTTATATTCCTGCTATGGCCGATGAAAGTGTGATGGTCAAGGGAAATGGCACCATTTTTTTAGCAGGGCCACCTCTTGTTAAGgt----ttgctctagctactcttgtactctaaaatactgtgtgataatctctggctatttctatgttcttgatttttaaaatctgtttcttttaaatttcaatattttaacactaacaatgtgtttgtgtattttctatgcatttataaccaaaattaaccttaattaaatgattttatag

upper sequence: AT4G34030.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv03s0063g00290.t01 (Vitis vinifera), 5'ss of exon 3
CTGCACTGCTGGTGGTGCCTACATTCCTGCCATGGCTGATGAAAGTGTAATGGTCAAAGGGAATGGTACCATATTTTTAGCAGGACCGCCACTTGTCAAGgtcaatt-----ttctcaagttactttctctctctctctctctcgttctagtcttaagtagtttcttgagaatctaacgctaaatgaaaaagcttttgaacag
 || |||||||||||||| || || ||||| ||||| ||||||||||| ||||||||||| ||||||||||||||| |||| || || |||||||| ||||| | ||     |  |   |      |   |   ||   |  | | |  | || ||| |  |||     |  |   | | |   |||| ||  || | || | 
TTGTACTGCTGGTGGTGCTTATATACCTGCAATGGCGGATGAAAGTGTTATGGTCAAAGGAAATGGTACCATATTTCTAGCTGGGCCTCCACTTGTGAAGgttagttccagatcttttggcatgcctaaatgcttcatgcagtggctggattcataattctttttgcatgttttgcatgtttcctgaagaa--ttataaaaa-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86059294|gb|DR355051.1|DR355051
EST:     TGGTCAAAGGGAATGGTACCATATTTTTGGCAGGACCGCCACTTGTCAAG                         GCTGCTACAGGAGAAGAAGTTTCAGCTGAGGATTTAGGAGGCGCCACTGTT
genomic: TGGTCAAAGGGAATGGTACCATATTTTTAGCAGGACCGCCACTTGTCAAGgtcaattttc ... ttttgaacagGCTGCTACAGGAGAAGAAGTTTCAGCTGAGGATTTAGGAGGCGCCACTGTT
EST: gi|86088396|gb|DR384155.1|DR384155
EST:     GGTCAAGGGGAATGGTACCATA-TTTTGGCAGGACCGCCAC-TGTCAAAG                         GCTGCTACAGGAGAAGAAGTTNCAGCTGAGGATTTAGGAGGCGCCACTGT
genomic: GGTCAAAGGGAATGGTACCATATTTTTAGCAGGACCGCCACTTGTC-AAGgtcaattttc ... ttttgaacagGCTGCTACAGGAGAAGAAGTTTCAGCTGAGGATTTAGGAGGCGCCACTGT