1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAGAAAAACAGGTGCAGTTCTGGAGAAAGTGATTGAGAGAAGGCAAAAAAGGATGATAAAGAATAGGGAATCAGCTGCAAGATCCCGCGCTCGCAAGCAAgtgagtgtttgtttaaattttggagattaaagaaaccttaaaactgtgaccatgttatttactttttcactttcttgcttgacag
species | Arabidopsis thaliana |
transcript | AT4G34000.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGATGATAAAGAATAGGGAATCAGCTGCAAGATCCCGCGCTCGCAAGCAA GCTTATACGATGGAACTGGAAGCAGAAATTGCGCAACTCAAAGAATTGAATEST: gi|163985236|gb|ES031919.1|ES031919
genomic: GGATGATAAAGAATAGGGAATCAGCTGCAAGATCCCGCGCTCGCAAGCAAgtgagtgttt ... tgcttgacagGCTTATACGATGGAACTGGAAGCAGAAATTGCGCAACTCAAAGAATTGAAT
EST: TAGGGAATCAGCTGCAAGATCCCGCGCTCGCAAGCAA GCTTATACGATGGAACTGGAAGCAGAAATTGCGCAACTCAAAGAATTGAATEST: gi|116421675|gb|EG464267.1|EG464267
genomic: TAGGGAATCAGCTGCAAGATCCCGCGCTCGCAAGCAAgtgagtgttt ... tgcttgacagGCTTATACGATGGAACTGGAAGCAGAAATTGCGCAACTCAAAGAATTGAAT
EST: AATCAGCTGCAAGATCCCGCGCTCGCAAGCAA GCTTATACGATGGAACTGGAAGCAGAAATTGCGCAACTCAAAGAATTGAATEST: gi|116484744|gb|EG527336.1|EG527336
genomic: AATCAGCTGCAAGATCCCGCGCTCGCAAGCAAgtgagtgttt ... tgcttgacagGCTTATACGATGGAACTGGAAGCAGAAATTGCGCAACTCAAAGAATTGAAT
EST: GGATGATAAAGAATAGGGAATCAGCTGCAAGATCCCGCGCTCGCAAGCAA GCTTATACGATGGAACTGGAAGCAGAAATTGCGCAACTCAAAGAATTGAATEST: gi|116458117|gb|EG500709.1|EG500709
genomic: GGATGATAAAGAATAGGGAATCAGCTGCAAGATCCCGCGCTCGCAAGCAAgtgagtgttt ... tgcttgacagGCTTATACGATGGAACTGGAAGCAGAAATTGCGCAACTCAAAGAATTGAAT
EST: GGATGATAAAGAATAGGGAATCAGCTGCAAGATCCCGCGCTCGCAAGCAA GCTTATACGATGGAACTGGAAGCAGAAATTGCGCAACTCAAAGAATTGAAT
genomic: GGATGATAAAGAATAGGGAATCAGCTGCAAGATCCCGCGCTCGCAAGCAAgtgagtgttt ... tgcttgacagGCTTATACGATGGAACTGGAAGCAGAAATTGCGCAACTCAAAGAATTGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGAAAAACAGGTGCAGTTCTGGAGAAAGTGATTGAGAGAAGGCAAAAAAGGATGATAAAGAATAGGGAATCAGCTGCAAGATCCCGCGCTCGCAAGCAAgtgagtgtttgtttaaattttggagattaaagaaaccttaaaactgtgaccatgttatttactttttcactttcttgcttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA