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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTCCCATCTTCAAAGATGTATGATGCTGAGTCTCTTAGAGCTGGATATGCAATCTTTGCATCTGGAATTATAGTTGGATTCGCCAACCTTGTATGCGGgtctgtatctacccttttctccttccttacagttttggtttttggattccattgtcagatatgcaaccgaggtccacatttctcttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G32530.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G32530.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G143128_T01 (Zea mays), 5'ss of exon 3
GTGTCCCATCTTCAAAGATGTATGATGCTGAGTCTCTTAGAGCTGGATATGCAATCTTTGCATCTGGAATTATAGTTGGATTCGCCAACCTTGTATGCGGgtctgtatctacccttttctccttccttacagttttggtttttggattccattgtcagatatgcaaccgaggtccacatttctcttgcag
|||| ||| | ||  | ||||||||| | ||||||||| ||||||| ||||||||||||||||||||  |||| ||||| || || || ||||| |||||||  | |    || |  ||||| || |      | |||    |  ||||    ||   | |||         |  |  | |   || |||
GTGTGCCAACATCTCAAATGTATGATCCGGAGTCTCTTCGAGCTGGCTATGCAATCTTTGCATCTGGCCTTATCGTTGGCTTTGCTAATCTTGTTTGCGGgtaggca----ccatgctctccatcttgttccctctggcgaatttattctgcagtttcagatg-------attagatttcttctttacag

upper sequence: AT4G32530.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM5G867882_T01 (Zea mays), 5'ss of exon 3
GTGTCCCATCTTCAAAGATGTATGATGCTGAGTCTCTTAGAGCTGGATATGCAATCTTTGCATCTGGAATTATAGTTGGATTCGCCAACCTTGTATGCGGgtctgtatctacccttttctccttccttacagttttggtttttggattccattgtcagatatgcaaccgaggtccacatttctcttgcag
|||| ||| | ||  | ||||| ||| | ||||||||| ||||||| ||||| ||||||||||||||  |||| ||||| ||||| || ||||| |||||||  | | |   |    ||||| || |      | ||||   |  ||||    ||   | |||  |   |  | |  ||||     ||||
GTGTGCCAACATCCCAAATGTACGATCCGGAGTCTCTTCGAGCTGGCTATGCGATCTTTGCATCTGGTCTTATCGTTGGCTTCGCTAATCTTGTTTGCGGgtaggcaccgggc----tctccatcttgttccctctggtgaatttattctgcagtttcagatg--attaaatttcctattt-----gcag

upper sequence: AT4G32530.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA17G31060.1 (Glycine max), 5'ss of exon 3
GTGTCCCATCTTCAAAGATGTATGATGCTGAGTCTCTTAGAGCTGGATATGCAATCTTTGCATCTGGAATTATAGTTGGATTCGCCAACCTTGTATGCGGgtctgtatctacccttttctccttccttacagttttggtttttggattccattgtcagatatgcaaccgaggtccacatttctcttgcag--------------------------
|||| ||| | ||||| || ||||   | ||||||||||| ||||||||||||||||||||||| ||| | || || || ||||| || ||||| || |||| |||||    | ||||  ||| |||  ||  | | |       ||||    |    ||        |   |   ||||  |||   |                           
GTGTTCCAGCATCAAATATTTATGCACCAGAGTCTCTTAGGGCTGGATATGCAATCTTTGCATCGGGATTAATTGTGGGCTTCGCAAATCTTGTTTGTGGgtgtgtatt---cttttttacctacctctcatatcttggcaggaaattctcccgatgaatgcagggtggccttttccattcttctattacattttcaattttttctgctctggcag

upper sequence: AT4G32530.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv04s0008g04760.t01 (Vitis vinifera), 5'ss of exon 3
GTGTCCCATCTTCAAAGATGTATGATGCTGAGTCTCTTAGAGCTGGATATGCAATCTTTGCATCTGGAATTATAGTTGGATTCGCCAACCTTGTATGCGGgtctgtatctacccttttctcc------ttccttacagt------------tttggtttttggattccattgtcagatatgcaaccgaggtccacatttctcttgcag---
|||| ||| | || || || ||||   |||||||||||||||| ||||||||||| ||||| ||||| ||||| || || || || |||||||| |||||||  ||  |     |  | |||      |  ||   |||            | |   ||||| ||||  |||      |   |    |     || ||  ||| |||    
GTGTTCCAGCATCCAAAATATATGCACCTGAGTCTCTTAGAGCAGGATATGCAATATTTGCCTCTGGGATTATTGTGGGCTTTGCAAACCTTGTCTGCGGgttagttccccatttaatttccaataaatatctcttagtggatatgaaatctataccttttgtattcttttgcttt-cagagagaaaaaaataactttcttctggcaccag

upper sequence: AT4G32530.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv09s0002g05720.t01 (Vitis vinifera), 5'ss of exon 3
GTGTCCCATCTTCAAAGATGTATGATGCTGAGTCTCTTAGAGCTGGATATGCAATCTTTGCATCTGGAATTATAGTTGGATTCGCCAACCTTGTATGCGGgtctgtatctacccttttctcc-----ttcctt-----acagttttggtttttgg---attccattgtcagatatgcaaccgaggtccacatttctcttgcag-------
|||| ||  | || || || ||||   | ||||| |||||||| ||||||||||||||||| ||||||||||| || || || ||||||||||| || |||| ||| || | | ||   | |     || |||     ||   | ||  ||       | | ||||      ||  ||       |    ||||   ||   |       
GTGTGCCTGCATCCAATATTTATGCACCGGAGTCCCTTAGAGCCGGATATGCAATCTTTGCCTCTGGAATTATTGTGGGTTTTGCCAACCTTGTCTGTGGgtatgtttccagctttccttgcatatatttcttcagaaacgagtatgacttcgcacctaatgcattccgttctaatcacttcccttttttattttctttttgggataaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164147629|gb|ES178937.1|ES178937
EST:     AATCTTTGCATCTGGAATTATAGTTGGATTCGCCAACCTTGTATGCGG                         GTTATGTGTAAGGAATCATTGGAAGCAGTTGTGCATTGTCCGATGC
genomic: AATCTTTGCATCTGGAATTATAGTTGGATTCGCCAACCTTGTATGCGGgtctgtatct ... tctcttgcagGTTATGTGTA-GGAATCATTGGAAGCAGTTGTGCATTGTCCGATGC
EST: gi|124757564|gb|EH847694.1|EH847694
EST:     TCGCCAACCTTGTATGCGG                         GTTATGTGTAGGAATCATTGGAAGCAGTTGTGCATTGTCCGATGCTCAGAA
genomic: TCGCCAACCTTGTATGCGGgtctgtatct ... tctcttgcagGTTATGTGTAGGAATCATTGGAAGCAGTTGTGCATTGTCCGATGCTCAGAA
EST: gi|125005783|gb|EL078052.1|EL078052
EST:     ATAGTTGGATTCGCCAACCTTGTATGCGG                         GTTATGTGTAGGAATCATTGGAAGCAGTTGTGCATTGTCCG
genomic: ATAGTTGGATTCGCCAACCTTGTATGCGGgtctgtatct ... tctcttgcagGTTATGTGTAGGAATCATTGGAAGCAGTTGTGCATTGTCCG
EST: gi|125256938|gb|EL271023.1|EL271023
EST:     CTAATCTTTGCATCTGGAATTATAGTTGGATTCGCCAACCTTGTATGCGG                         GTTATGTGTAGGAATCATTGGAAG
genomic: C-AATCTTTGCATCTGGAATTATAGTTGGATTCGCCAACCTTGTATGCGGgtctgtatct ... tctcttgcagGTTATGTGTAGGAATCATTGGAAG
EST: gi|116443834|gb|EG486426.1|EG486426
EST:     GCAATCTTTGCATCTGGAATTATAGTTGGATTCGCCAACCTTGTATGCGG                         GTTATGTGTAGGAATCATTGGAAGCAGTTGTGCATTGTCCGATGCTCAGAA
genomic: GCAATCTTTGCATCTGGAATTATAGTTGGATTCGCCAACCTTGTATGCGGgtctgtatct ... tctcttgcagGTTATGTGTAGGAATCATTGGAAGCAGTTGTGCATTGTCCGATGCTCAGAA
EST: gi|125037244|gb|EL109513.1|EL109513
EST:     CTTTGCATCTGGAATTATAGTTGGATTCGCCAACCTTGTATGCGG                         GTTATGTGTAGGAATCATTGGAAGCAGTTAGTGCATTGTCCGATGCTCAGA
genomic: CTTTGCATCTGGAATTATAGTTGGATTCGCCAACCTTGTATGCGGgtctgtatct ... tctcttgcagGTTATGTGTAGGAATCATTGGAAGCAGTT-GTGCATTGTCCGATGCTCAGA
EST: gi|125010745|gb|EL083014.1|EL083014
EST:     CTTTGCATCTGGAATTATAGTTGGATTCGCCAACCTTGTATGCGG                         GTTATGTGTAGGAATCATTGGAAGCAGTTGTGCATTGTCCGATG
genomic: CTTTGCATCTGGAATTATAGTTGGATTCGCCAACCTTGTATGCGGgtctgtatct ... tctcttgcagGTTATGTGTAGGAATCATTGGAAGCAGTTGTGCATTGTCCGATG