1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGGCCTAAGGTTCTTACGGTGGAGGACAAACTTGTGGTCCTTGGATGCAAgtaagctgaatttcttactcaataagatgtttttttgttctgcatatactaacacacaatgtaactgttttatag
species | Arabidopsis thaliana |
transcript | AT4G32120.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGGCCTAAGGTTCTTACGGTGGAGGACAAACTTGTGGTCCTTGGATGCAA AGATCTTGAGAGGAGAATTGTTGAAACTGAAATGGAGTTGGCACAGGCAAAEST: gi|164071111|gb|EL977202.1|EL977202
genomic: AGGCCTAAGGTTCTTACGGTGGAGGACAAACTTGTGGTCCTTGGATGCAAgtaagctgaa ... tgttttatagAGATCTTGAGAGGAGAATTGTTGAAACTGAAATGGAGTTGGCACAGGCAAA
EST: AGGCCTAAGGTTCTTACGGTGGAGGACAAACTTGTGGTCCTTGGATGCAA AGATCTTGAGAGGAGAATTGTTGAAACTGAAATGGAGTTGGCACEST: gi|164133040|gb|EL981447.1|EL981447
genomic: AGGCCTAAGGTTCTTACGGTGGAGGACAAACTTGTGGTCCTTGGATGCAAgtaagctgaa ... tgttttatagAGATCTTGAGAGGAGAATTGTTGAAACTGAAATGGAGTTGGCAC
EST: AGGCCTAAGGTTCTTACGGTGGAGGACAAACTTGTGGTCCTTGGATGCAA AGATCTTAGAGAGGAGAATTGTTGAAACTGAAATGGAGTTGGCACEST: gi|86064342|gb|DR360099.1|DR360099
genomic: AGGCCTAAGGTTCTTACGGTGGAGGACAAACTTGTGGTCCTTGGATGCAAgtaagctgaa ... tgttttatagAGATCTT-GAGAGGAGAATTGTTGAAACTGAAATGGAGTTGGCAC
EST: AGGCCTAAGGTTCTTACGGTGGAGGACAAACTTGTGGTCCTTGGATGCAA AGATCTTGAGAGGAGAATTGTTGAAACTGAAATGGAGTTGGCACAGGCAAA
genomic: AGGCCTAAGGTTCTTACGGTGGAGGACAAACTTGTGGTCCTTGGATGCAAgtaagctgaa ... tgttttatagAGATCTTGAGAGGAGAATTGTTGAAACTGAAATGGAGTTGGCACAGGCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGCCTAAGGTTCTTACGGTGGAGGACAAACTTGTGGTCCTTGGATGCAAgtaagctgaatttcttactcaataagatgtttttttgttctgcatatactaacacacaatgtaactgttttatag
- - - - - - - - GGTGGA
- - - - - - - - - GTGGAG
- - - - - - - - - TGGAGG
- - - - - - - - - - GGAGGA