1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGTTTGGGTTGCCCGTAGACCACCTGGTTACGCTTTTCTAGATTTCGAAGATCCTAGGGATGCCCGTGATGCTATCCGTGCTTTAGATGgtaatgatgcattcatattctttctattttgctttgttctcttagaagttgatgttttgattgggattggaaaataagtttggtggaatcttttaaaggagagaaatttgaggtttgcaattacttttgacttgaaacttcacaatttgacatggatattgtgataacggatag
species | Arabidopsis thaliana |
transcript | AT4G31580.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTATCCGTGCTTTAGATG GCAAGAATGGCTGGAGGGTTGAACAGTCTCACAATCGAGGTGAGCGTGGTGEST: gi|116418442|gb|EG461034.1|EG461034
genomic: CTATCCGTGCTTTAGATGgtaatgatgc ... taacggatagGCAAGAATGGCTGGAGGGTTGAACAGTCTCACAATCGAGGTGAGCGTGGTG
EST: AGATTTCGAAGATCCTAGGGATGCCCGTGATGCTATCCGTGCTTTAGATG GCAAGAATGGCTGGAGGGTTGAACAGTCTCACAATCGAGGTG-GCGATGGTEST: gi|125114960|gb|EL165155.1|EL165155
genomic: AGATTTCGAAGATCCTAGGGATGCCCGTGATGCTATCCGTGCTTTAGATGgtaatgatgc ... taacggatagGCAAGAATGGCTGGAGGGTTGAACAGTCTCACAATCGAGGTGAGCG-TGGT
EST: AGATTTCGAAGATCCTAGGGATGCCCGTGATGCTATCCGTGCTTTAGATG GCAAGAATGGCTGGAGGGTTGAACAGTCTCACAATCGAGGEST: gi|116418435|gb|EG461027.1|EG461027
genomic: AGATTTCGAAGATCCTAGGGATGCCCGTGATGCTATCCGTGCTTTAGATGgtaatgatgc ... taacggatagGCAAGAATGGCTGGAGGGTTGAACAGTCTCACAATCGAGG
EST: AGATTTCGAAGATCCTAGGGATGCCCGTGATGCTATCCGTGCTTTAGATG GCAAGAATGGCTGGAGGGTTGAACAGTCTCACAATCGAGGTG-GCGATGGT
genomic: AGATTTCGAAGATCCTAGGGATGCCCGTGATGCTATCCGTGCTTTAGATGgtaatgatgc ... taacggatagGCAAGAATGGCTGGAGGGTTGAACAGTCTCACAATCGAGGTGAGCG-TGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTTGGGTTGCCCGTAGACCACCTGGTTACGCTTTTCTAGATTTCGAAGATCCTAGGGATGCCCGTGATGCTATCCGTGCTTTAGATGgtaatgatgcattcatattctttctattttgctttgttctcttagaagttgatgttttgattgggattggaaaataagtttggtggaatcttttaaaggagagaaatttgaggtttgcaattacttttgacttgaaacttcacaatttgacatggatattgtgataacggatag
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