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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAGgtgcgttatttcctgaattacaaagttagataagatagctttttgattaaacagagagattgatgttattttgtccaaaaccacctgctaaatgttccttgtgcatacaagtttagaggcaatgctgataatctgtacagatacatagattgttatgcattgacattttccatattgtttttgtcag

Basic information

species Arabidopsis thaliana
transcript AT4G30220.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164148928|gb|ES032866.1|ES032866
EST:     GTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAG                         CTGGGAAACACCGAAGAATA
genomic: GTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAGgtgcgttatt ... tttttgtcagCTGGGAAACACCGAAGAATA
EST: gi|125309073|gb|EL323158.1|EL323158
EST:     GTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAG                         CTGGGAAACACCGAAGAATATA
genomic: GTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAGgtgcgttatt ... tttttgtcagCTGGGAAACACCGAAGAATATA
EST: gi|163979686|gb|ES036541.1|ES036541
EST:     CTGTTGACTCCTACATGAACTTGCAG                         CTGGGAAACACCGAAGAATATATTGATGGACAATTGACAGGGAACCTTGGA
genomic: CTGTTGACTCCTACATGAACTTGCAGgtgcgttatt ... tttttgtcagCTGGGAAACACCGAAGAATATATTGATGGACAATTGACAGGGAACCTTGGA
EST: gi|164027104|gb|ES017576.1|ES017576
EST:     GTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAG                         CTGGGAAACACCGAAGAATATATTGATGGACAA
genomic: GTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAGgtgcgttatt ... tttttgtcagCTGGGAAACACCGAAGAATATATTGATGGACAA
EST: gi|124848527|gb|EH932964.1|EH932964
EST:     GTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAG                         CTGGGAAACACCGAAGAATATATTGATGGACAATTGACAGGGAA
genomic: GTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAGgtgcgttatt ... tttttgtcagCTGGGAAACACCGAAGAATATATTGATGGACAATTGACAGGGAA
EST: gi|19874858|gb|AU235689.1|AU235689
EST:     GTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAG                         CTGGGAAACACCGAAGAATATATTGATGGACAATTGACAGGGAACCTTGGA
genomic: GTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAGgtgcgttatt ... tttttgtcagCTGGGAAACACCGAAGAATATATTGATGGACAATTGACAGGGAACCTTGGA