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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGGGCCGAAGAAGGGTGTAATTAGTCAGTCTGTGAAAGATGTTATCCAGAGTTTAGTCGATGATGATCTTGTTGCGAAAGACAAGATTGGAATTTCTgtgagtagcttagtgttcctatgttggatctttttatttcatttgttgccatatagtccttgtctctgttatatgttgtttgacggtgttcattattttgcaaatgaag

Basic information

species Arabidopsis thaliana
transcript AT4G29170.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G29170.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA01G00780.1 (Glycine max), 5'ss of exon 3
GATGGGGCCGAAGAAGGGTGTAATTAGTCAGTCTGTGAAAGATGTTATCCAGAGTTTAGTCGATGATGATCTTGTTGCGAAAGACAAGATTGGAATTTCTgtgagtagcttagtgttcctatgttggatctttttatttcatttgttgccatatagtccttgtctctgttatatgttgtttgacggtgttcat-tattttgcaaatgaag
|||||| || | ||||||||| |||  ||||||||||||||||||  |||| |||||||| |||||||| |||||| | ||||| || || |||| |||||| |||       |   || ||| ||   |||     |||   ||||   ||       || ||   | ||| |  ||        | ||| | || |||          
GATGGGTCCCAGGAAGGGTGTCATTTCTCAGTCTGTGAAAGATGTGGTCCAAAGTTTAGTGGATGATGACCTTGTTTCCAAAGATAAAATAGGAACTTCTgtaagttaacatctaaaccaatgatgctccttccctattctgctgttagtatgagaaaattatcaaagatatgtagtggagatttttcttcctctaattt----------

upper sequence: AT4G29170.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv11s0016g02770.t01 (Vitis vinifera), 5'ss of exon 2
GATGGGGCCGAAGAAGGGTGTAATTAGTCAGTCTGTGAAAGATGTTATCCAGAGTTTAGTCGATGATGATCTTGTTGCGAAAGACAAGATTGGAATTTCTgtgagtagcttagtgttcctatgttggatct----ttttatttcatttgttgccatatagtccttgtctctgttatatgttgtttgacggtgttcattattttgcaaatgaag
| |||| || ||||||||||| || || |||||||||||||||||| |||| ||| ||||||| ||||| |||||||| |||||||||||||||| ||||||||||     | ||||   | |  ||        ||  | |     | ||   || || | |||   | | || ||| || |||   || ||     | | || |       
GTTGGGTCCCAAGAAGGGTGTTATCAGCCAGTCTGTGAAAGATGTTGTCCAAAGTCTAGTCGACGATGACCTTGTTGCAAAAGACAAGATTGGAACTTCTgtgagt----caatgttttcaggaggggcacaaaattgaaatgtgaattttattatgtatttcttagtt-tattctat-ttattttttggagtgagccactatgga-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116428363|gb|EG470955.1|EG470955
EST:     AGAGTTTAGTCGATGATGATCTTGTTGCGAAAGACAAGATTGGAATTTCT                         ATCTACTTTTGGAGCCTTCCCAGCTGTGCTGGCAATCAA
genomic: AGAGTTTAGTCGATGATGATCTTGTTGCGAAAGACAAGATTGGAATTTCTgtgagtagct ... gcaaatgaagATCTACTTTTGGAGCCTTCCCAGCTGTGCTGGCAATCAA