1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAGATGGTCCTAAGCTTGTGAGAGAACTTTTCAGAGTTGCTGATGACCTTTCACCATCAATCGTCTTCATAGATGAGATTGATGCTGTTGGTACCAAGCGgtaagttaaactattttcataaacctgatctataacccattgataatggttatctgattacttgttgtttgaaagaacag
species | Arabidopsis thaliana |
transcript | AT4G29040.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCACCATCAATCGTCTTCATAGATGAGATTGATGCTGTTGGTACCAAGCG GTATGACGCTCEST: gi|86082474|gb|DR378233.1|DR378233
genomic: TCACCATCAATCGTCTTCATAGATGAGATTGATGCTGTTGGTACCAAGCGgtaagttaaa ... gaaagaacagGTATGACGCTC
EST: TCATAGATGAGATTGATGCTGTTGGTACCAAGCG GTATGACGCTCACTCAGGAGGTGAACGTGAGATCCAAAGAACTATGTTGGAEST: gi|164146034|gb|ES197659.1|ES197659
genomic: TCATAGATGAGATTGATGCTGTTGGTACCAAGCGgtaagttaaa ... gaaagaacagGTATGACGCTCACTCAGGAGGTGAACGTGAGATCCAAAGAACTATGTTGGA
EST: GCTGTTGGTACCAAGCG GTATGACGCTCACTCAGGAGGTGAACGTGAGATCCAAAGAACTATGTTGGAEST: gi|125243947|gb|EL258032.1|EL258032
genomic: GCTGTTGGTACCAAGCGgtaagttaaa ... gaaagaacagGTATGACGCTCACTCAGGAGGTGAACGTGAGATCCAAAGAACTATGTTGGA
EST: TCACCATCAATCGTCTTCATAGATGAGATTGATGCTGTTGGTACCAAGCG GTATGACGCTCACTCAGGAGGTGEST: gi|125063705|gb|EL131590.1|EL131590
genomic: TCACCATCAATCGTCTTCATAGATGAGATTGATGCTGTTGGTACCAAGCGgtaagttaaa ... gaaagaacagGTATGACGCTCACTCAGGAGGTG
EST: TCACCATCAATCGTCTTCATAGATGAGATTGATGCTGTTGGTACCAAGCG GTATGACGCTCACEST: gi|125280251|gb|EL294336.1|EL294336
genomic: TCACCATCAATCGTCTTCATAGATGAGATTGATGCTGTTGGTACCAAGCGgtaagttaaa ... gaaagaacagGTATGACGCTCAC
EST: TCACCATCAATCGTCTTCATAGATGAGATTGATGCTGTTGGTACCAAGCG GTATGACGCTCACTCAGGAGGTGAACGTGAGATCCAAAEST: gi|125193051|gb|EL208005.1|EL208005
genomic: TCACCATCAATCGTCTTCATAGATGAGATTGATGCTGTTGGTACCAAGCGgtaagttaaa ... gaaagaacagGTATGACGCTCACTCAGGAGGTGAACGTGAGATCCAAA
EST: TCACCATCAATCGTCTTCATAGATGAGATTGATGCTGTTGGTACCAAGCG GTATGACGCTCACTCAGGAGGTGAA
genomic: TCACCATCAATCGTCTTCATAGATGAGATTGATGCTGTTGGTACCAAGCGgtaagttaaa ... gaaagaacagGTATGACGCTCACTCAGGAGGTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGATGGTCCTAAGCTTGTGAGAGAACTTTTCAGAGTTGCTGATGACCTTTCACCATCAATCGTCTTCATAGATGAGATTGATGCTGTTGGTACCAAGCGgtaagttaaactattttcataaacctgatctataacccattgataatggttatctgattacttgttgtttgaaagaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT