1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ACTTTTGCTGTTTTATCTGGAGTCCACAGTTTGGTTGTTTGCCTTCTGAAGCAAATCCGAGGCAAAGATGACGgtgagactcttcagattgcttccttcttgtgtaaatgattagtttttacatgaacttgtaatctctctcctacttatattgcttttgttctttttttacag
species | Arabidopsis thaliana |
transcript | AT4G26670.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAAATCCGAGGCAAAGATGACG CCATTAATGTTGGAGTAGCAGGGTGTTGCACTGGTCTTGCTCTTAGTTTCCEST: gi|125057171|gb|EL126481.1|EL126481
genomic: CAAATCCGAGGCAAAGATGACGgtgagactct ... ttttttacagCCATTAATGTTGGAGTAGCAGGGTGTTGCACTGGTCTTGCTCTTAGTTTCC
EST: AAATCCGAGGCAAAGATGACG CCATTAATGTTGGAGTAGCAGGGTGTTGCACTGGTCTTGCTCTTAGTTTCCEST: gi|124742227|gb|EH833389.1|EH833389
genomic: AAATCCGAGGCAAAGATGACGgtgagactct ... ttttttacagCCATTAATGTTGGAGTAGCAGGGTGTTGCACTGGTCTTGCTCTTAGTTTCC
EST: CCACAGTTTGGTTGTTTGCCTTCTGAAGCAAATCCGAGGCAAAGATGACG CCATTAATGTTGGAGTAGCAGGGTGTTGCACTGGTCTTGEST: gi|86075078|gb|DR370835.1|DR370835
genomic: CCACAGTTTGGTTGTTTGCCTTCTGAAGCAAATCCGAGGCAAAGATGACGgtgagactct ... ttttttacagCCATTAATGTTGGAGTAGCAGGGTGTTGCACTGGTCTTG
EST: CCACAGTTTGGTTGTTTGCCTTCTGAAGCAAATCCGAGGCAAAGATGACG CCATTAATGTTGGAGTAGCAGGGTGTTGCACTGGTCTTGCTCTTAGTTTCC
genomic: CCACAGTTTGGTTGTTTGCCTTCTGAAGCAAATCCGAGGCAAAGATGACGgtgagactct ... ttttttacagCCATTAATGTTGGAGTAGCAGGGTGTTGCACTGGTCTTGCTCTTAGTTTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTTTTGCTGTTTTATCTGGAGTCCACAGTTTGGTTGTTTGCCTTCTGAAGCAAATCCGAGGCAAAGATGACGgtgagactcttcagattgcttccttcttgtgtaaatgattagtttttacatgaacttgtaatctctctcctacttatattgcttttgttctttttttacag
- - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG