Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTGCTGGAGGCGCAGCATCGGGAAAGACTACTGTTTGTGATATGATAATCCAGCAACTGCACGATCAGCGTGTTGTACTTATTAACCTGgtaattttgttttgctaataaagtttcatagagctaagtgataaccaccggtttgatttgtgtttcgaatgtatatgaagtcaattgaattccacacaat...

Basic information

species Arabidopsis thaliana
transcript AT4G26510.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G26510.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA08G45270.1 (Glycine max), 5'ss of exon 3
GTGTTGCTGGAGGCGCAGCATCGGGAAAGACTACTGTTTGTGATATGATAATCCAGCAACTGCACGATCAGCGTGTTGTACTTATTAACCTGgtaattt-tgttttgctaataaagtttcatagagctaagtgataaccaccggtttgatttgtgtttcgaatgtatatgaagtcaat-tgaattccacacaat--
|||||||||| || |||||||| || ||||| || |||||||||||||| || ||||| || || ||||| || ||||||||| |||| | |||| |   |  |||  |  || | ||    |     |||| | ||  ||   |  |||||    || |     || ||  | | || || || | |  |  |  
GTGTTGCTGGGGGTGCAGCATCTGGCAAGACAACAGTTTGTGATATGATTATTCAGCAGCTTCATGATCAACGAGTTGTACTTGTTAATCAGgtattcaattctttctttgtatacttctcaatgatcaagttaaaattac-attaagatttactatttgtg---atttggggcccatatgcatcctattctctcg

upper sequence: AT4G26510.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA18G08180.1 (Glycine max), 5'ss of exon 3
GTGTTGCTGGAGGCGCAGCATCGGGAAAGACTACTGTTTGTGATATGATAATCCAGCAACTGCACGATCAGCGTGTTGTACTTATTAACCTGgtaattt-tgttttgctaataaagtttcatagagctaagtgataaccac----cggtttg--atttgtgtttcgaatgt-atatgaagtcaattgaattccacacaat
 ||||||||| || |||||||| || ||||| || |||||||||||||| || ||||| || || ||||| || ||||||||| |||| | || | |   |  |||  |  || | ||    |     ||||   ||  ||     | |||   ||||||| || |      ||||| |  | |||    ||||      
-TGTTGCTGGGGGTGCAGCATCTGGCAAGACAACAGTTTGTGATATGATTATTCAGCAGCTTCATGATCAACGAGTTGTACTTGTTAATCAGGcactgaattctttctttgtatacttctcaatgatcaagttgaaattacattaagatttactatttgtgatttgggccccatatgtatcctattct-ctcca------

upper sequence: AT4G26510.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 3
GTGTTGCTGGAGGCGCAGCATCGGGAAAGACTACTGTTTGTGATATGATAATCCAGCAACTGCACGATCAGCGTGTTGTACTTATTAACCTGgtaattttgttttgctaataaagtttcatagagctaagtgataaccaccggtttgatttgtgtttcga-atgtatatgaagtcaa---ttgaattccacacaat
|||||||||| || ||||| || || || ||||| |||||||| ||||| ||  |||| ||||| |||||||||||||||||  | |||| |||||||     ||   |||    ||   |   |  ||||||  |       |||  | |   |||| |  ||  | |||  | ||   |||||   |  |    
GTGTTGCTGGGGGTGCAGCTTCTGGGAAAACTACAGTTTGTGACATGATTATTGAGCAGCTGCATGATCAGCGTGTTGTACTAGTAAACCAGgtaattcgtgattcaaaatgtcattctctgagg--aagtgaagaaagttcatttt-tgtaaatttcaatgtgcttttgatttgaaaatttgaaccacttaggg-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19876190|gb|AU237021.1|AU237021
EST:     ATATGATAATCCAGCAACTGCACGATCAGCGTGTTGTACTTATTAACCTG                         GACTCGTTCTATCATAATCTGACTGAAGAAGGACTTGCTAGAGTTCATGAA
genomic: ATATGATAATCCAGCAACTGCACGATCAGCGTGTTGTACTTATTAACCTGgtaattttgt ... tttttggcagGACTCGTTCTATCATAATCTGACTGAAGAAGAACTTGCTAGAGTTCATGAA
EST: gi|125098971|gb|EL154942.1|EL154942
EST:     ATATGATAATCCAGCAACTGCACGATCAGCGTGTTGTACTTATTAACCTG                         GACTCGTTCTATCATAAT
genomic: ATATGATAATCCAGCAACTGCACGATCAGCGTGTTGTACTTATTAACCTGgtaattttgt ... tttttggcagGACTCGTTCTATCATAAT