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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGCGAGAGTAATAGTGCAACGTTGACATTTGATGGTGTTGATAAAATGGGTGAAAGGCTAGCTAATGAGgtagtatttggatgcattgttgtttcctctgtaacttgcaacttaaaatttgatttctatgtttgaaaatttgtgaag

Basic information

species Arabidopsis thaliana
transcript AT4G25770.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G25770.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM5G820727_T02 (Zea mays), 5'ss of exon 3
GTAGCGAGAGTAATAGTGCAACGTTGACATTTGATGGTGTTGATAAAATGGGTGAAAGGCTAGCTAATGAGgtagtatttggatgcattgttgtttcctctgtaacttgcaactta---aaatttgatttctatgtttgaaaatttgtgaag--------
| ||  || | ||   ||| ||   |||||||||||||||||||  ||||||||||||| |||| ||||||||| ||| |   ||  ||| ||  || |  | |  |  |||| |    |  | |   |  |   | | |   |||              
GAAGTCAGTGCAACTCTGCCACTCAGACATTTGATGGTGTTGATTTAATGGGTGAAAGgttagcaaatgaggta-tatctttttgatttggtgaatcata-gaagttgacaacatgtgcatgtctagctaattcatctaatttttttctttctacattaa

upper sequence: AT4G25770.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM5G820727_T06 (Zea mays), 5'ss of exon 3
GTAGCGAGAGTAATAGTGCAACGTTGACATTTGATGGTGTTGATAAAATGGGTGAAAGGCTAGCTAATGAGgtagtatttggatgcattgttgtttcct------ctgtaacttgca-------acttaaa--atttgatttctatgtttgaaaatttgtgaag--------
| ||  || | ||   ||| ||   |||||||||||||||||||  ||||||||||||| |||| ||||||||| ||| |   ||  ||| ||  || |          ||| ||         |  |||   || | |||| | | |||  | |||     |         
GAAGTCAGTGCAACTCTGCCACTCAGACATTTGATGGTGTTGATTTAATGGGTGAAAGGTTAGCAAATGAGgta-tatctttttgatttggtgaatcatagaagttgacaacatgtgcatgtctagctaattcatctaatttttttctttctacattaaactaaccgcatgc

upper sequence: AT4G25770.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA04G20400.2 (Glycine max), 5'ss of exon 3
GTAGCGAGAGTAATAGTGCAACGTTGACATTTGATGGTGTTGATAAAATGGGTGAAAGGCTAGCTAATGAGgtagtatttggat-----gcattgttgtttcctctgtaacttgcaacttaaaatttgatt--tctatgtttgaaaatttg----tgaag---------------------------------------------------
| || ||  | |||  | |||  ||||| |||||||||||||||| |||||| || ||||||||| | |||||| | || | |      | ||  |  |||  | |     || |||  | ||  |   ||  | |   |||  |   |||    || ||                                                   
GCAGTGAATGCAATTCTTCAAAATTGACGTTTGATGGTGTTGATACAATGGGCGAGAGGCTAGCTGAAGAGgtatttttggtaattatagtatgatcatttttttttctctttacaatcttaatctctcttaattttcatttacagtgttggctttgcagcgactcactcagtcacatatatatcttcagttttaattcatatttatgcag

upper sequence: AT4G25770.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA06G25620.1 (Glycine max), 5'ss of exon 4
GTAGCGAGAGTAATAGTGCAACGTTGACATTTGATGGTGTTGATAAAATGGGTGAAAGGCTAGCTAATGAGgtagtatt-tggatgcattgt--tgtttcctctgtaacttgcaa-cttaaaatttgatttctatgtttgaaaatttgtgaag----------------------------------------------------------
| || ||  | |||  | |||  ||||| |||||||||||||||| |||||| || ||||||||| | |||||| | |  |   |  | | |  |  ||  | |     || ||| |||||  | | ||   ||  ||| |      |||  |                                                          
GCAGTGAATGCAATTCTTCAAAATTGACGTTTGATGGTGTTGATACAATGGGAGAGAGGCTAGCTGAAGAGgtattttggtaattataatatgataatttttttactctttacaatcttaatctctcatacttaattttcatttacagtgttggctttgcagtgactcagtcacatatatatatcatcagttttaattcatatttatgcag