1 5' 3' | 2 5' 3' | 3 5' 3' |
GTTGGGTTAATCGCTTTGCTAATGCTGGGGACACAGCCTTGGAAGTGGCAGGAAACACAGCAATGCGGgtgggttcccttttgtttagcttctctacaacgtaaatgcaacattatgggtgttcaaaacttgtaaattgggattttgcag
species | Arabidopsis thaliana |
transcript | AT4G25680.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTAATGCTGGGGACACAGCCTTGGAAGTGGCAGGAAACACAGCAATGCGG ATGAAGCAAGCCAAAACTGAACTTGTGTCAGCTAGTAAAGTGGCTTATCGCEST: gi|124821702|gb|EH906568.1|EH906568
genomic: CTAATGCTGGGGACACAGCCTTGGAAGTGGCAGGAAACACAGCAATGCGGgtgggttccc ... gattttgcagATGAAGCAAGCCAAAACTGAACTTGTGTCAGCTAGTAAAGTGGCTTATCGC
EST: CACAGCAATGCGG ATGAAGCAAGCCAAAACTGAACTTGTGTCAGCTAGTAAAGTGGCTTATCGC
genomic: CACAGCAATGCGGgtgggttccc ... gattttgcagATGAAGCAAGCCAAAACTGAACTTGTGTCAGCTAGTAAAGTGGCTTATCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGGGTTAATCGCTTTGCTAATGCTGGGGACACAGCCTTGGAAGTGGCAGGAAACACAGCAATGCGGgtgggttcccttttgtttagcttctctacaacgtaaatgcaacattatgggtgttcaaaacttgtaaattgggattttgcag
- - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - TGGAAG