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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGCCTCGACTAAGAGCTTCCATTCTTCATAGTCCAATTCTTTCTGGGCTTAGAGTTATGTATCCCGTTAAGCGAACTTATTGGTTTGACATATACAAGgtgaacataatacccttttgatttctctacatgatgttgctgataaacattcctccttcttgacaccgttttgtttgatcttcttcag

Basic information

species Arabidopsis thaliana
transcript AT4G24760.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G24760.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os12g18860.1 (Oryza sativa), 5'ss of exon 3
TTTGCCTCGACTAAGAGCTTCCATTCTTCATAGTCCAATTCTTTCTGGGCTTAGAGTTATGTATCCCGTTAAGCGAACTTATTGGTTTGACATATACAAGgtgaaca--------taatacccttttgattt--ctctacatgatgttgctgataaacattcctcct---tcttgacaccg---ttttgtttgatcttcttcag-------
 |||| ||| ||  |||||    |  | || ||||| || || || ||  | |||||||||||||| || ||||| || || |||||||||||||| |||||             | || || | |||||||  ||  |  |  | || ||   |  |   |||  |   | || ||||     |||   | | | | | |          
ATTGCATCGGCTTCGAGCTGTTGTCTTGCACAGTCCTATACTGTCAGGATTGAGAGTTATGTATCCTGTGAAGCGTACATACTGGTTTGACATATATAAGgtttgttatccttttttattccatgttgatttagcttgatctattatttcttgcatgctgcccttttctatattaacactcaactttccctcggtatccattgacttccag

upper sequence: AT4G24760.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G039214_T01 (Zea mays), 5'ss of exon 3
TTTGCCTCGACTAAGAGCTTCCATTCTTCATAGTCCAATTCTTTCTGGGCTTAGAGTTATGTATCCCGTTAAGCGAACTTATTGGTTTGACATATACAAGgtgaacataatacccttttgatttctctacatgatgttgctgataaacattcctccttcttgacaccgttttgtttgatcttcttcag-----------------
|||  |||  ||  |||||    | || |||||||| ||  | || ||||| |||||||||||||| || ||||| || |||||||||||||| ||||||||     |  |   || || ||| |   |    || |||  | ||  |  | ||   |||       |  |  |||  | || |||||                 
TTTATCTCAGCTGCGAGCTGTTGTCCTGCATAGTCCTATATTGTCAGGGCTGAGAGTTATGTATCCTGTGAAGCGCACATATTGGTTTGACATCTACAAGgtt--tgtcgtcatctgttaattgcggcattcaatattga-gttatccgcttctatatctcagg--tgcctgattttttgttattcaggcgacatgcaattttgt

upper sequence: AT4G24760.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: PP1S123_154V6.1 (Physcomitrella patens), 5'ss of exon 3
TTTGCCTCGACTAAGAGCTTCCATTCTTCATAGTCCAATTCTTTCTGGGCTTAGAGTTATGTATCCCGTTAAGCGAACTTATTGGTTTGACATATACAAGgtgaac--ataatacccttttgatttctcta---catgatgttgctgataaacattcctcc-----ttcttgacaccgttttgtttgatcttcttcag--
  | ||  | ||  ||| |    | ||||| |||||||| ||||| || ||| |||||||||| || || || || || || ||||||||||| ||||||||   |  || |     |  | ||| |   |   | | |||  | |   | | ||||   |      ||||   |   |||| ||| || |         
GCTACCCAGTCTTCGAGGTGTTGTACTTCACAGTCCAATCCTTTCCGGACTTCGAGTTATGTACCCAGTGAAACGCACGTACTGGTTTGACATTTACAAGgtatgctgatgaactattccttattgcagcaacacgtaatgcaggtttcacaaattcacacggaatctcttccaaagcttttattttatatgagcagacc

upper sequence: AT4G24760.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: EFJ19908 (Selaginella moellendorffii), 5'ss of exon 3
TTTGCCTCGACTAAGAGCTTCCATTCTTCATAGTCCAATTCTTTCTGGGCTTAGAGTTATGTATCCCGTTAAGCGAACTTATTGGTTTGACATATACAAGgtgaacataatacccttttgatttctctacatgatgttgctgataaacattcctccttcttgacaccgttttgtttgatcttcttcag
  ||||  | ||  | |||    ||||||| || || ||||| ||||| ||  |||| ||||||||||| ||||| || || ||||||||||| ||||||||         ||  | ||| |||||||      | || |    |  ||  |  |  ||     || | ||| |||| | |    |||
ACTGCCAAGGCTCCGGGCTGTAGTTCTTCACAGCCCGATTCTATCTGGACTGCGAGTAATGTATCCCGTGAAGCGCACGTACTGGTTTGACATCTACAAGgt---------actttgttgttttctcttttcacttttcccagcacgcaagctccgctc-----actgctttttttgttttcgcgcag