1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GTTCCAAGCTGAGGTTTCTCGGCTTATGGACATTATTATCAACTCTCTATACAGTAACAAGGACATTTTCTTAAGAGAGTTGATCTCCAATGCTTCTGATgtaagcagcttcgtgtacattgttttagtgagtttttgggatacctcgttaaataggggaactaataagtgtctgtgttggtgattttcag
species | Arabidopsis thaliana |
transcript | AT4G24190.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACAGTAACAAGGACATTTTCTTAAGAGAGTTGATCTCCAATGCTTCTGAT GCCTTGGACAAAATTAGGTTCCTTGCACTCEST: gi|124983052|gb|EL055810.1|EL055810
genomic: ACAGTAACAAGGACATTTTCTTAAGAGAGTTGATCTCCAATGCTTCTGATgtaagcagct ... tgattttcagGCCTTGGACAAAATTAGGTTCCTTGCACTC
EST: ACAGTAACAAGGACATTTTCTTAAGAGAGTTGATCTCCAATGCTTCTGAT GCCTTGGACAAAATTAGGTTEST: gi|125255828|gb|EL269913.1|EL269913
genomic: ACAGTAACAAGGACATTTTCTTAAGAGAGTTGATCTCCAATGCTTCTGATgtaagcagct ... tgattttcagGCCTTGGACAAAATTAGGTT
EST: ACAGTAACAAGGACATTTTCTTAAGAGAGTTGATCTCCAATGCTTCTGAT GCCTTGGACAAAAATTAGGTTEST: gi|164113808|gb|ES187909.1|ES187909
genomic: ACAGTAACAAGGACATTTTCTTAAGAGAGTTGATCTCCAATGCTTCTGATgtaagcagct ... tgattttcagGCCTTGGACAAAA-TTAGGTT
EST: ACAGTAACAAGGACATTTTCTTAAGAGAGTTGATCTCCAATGCTTCTGAT GCCTTGGACAAAATTAAGGTTCCTTGCACTCACTGACAAAGACEST: gi|164057608|gb|ES070821.1|ES070821
genomic: ACAGTAACAAGGACATTTTCTTAAGAGAGTTGATCTCCAATGCTTCTGATgtaagcagct ... tgattttcagGCCTTGGACAAAATTA-GGTTCCTTGCACTCACTGACAAAGAC
EST: ATCTCCAATGCTTCTGAT GCCTTGGAC-AAATTAGGTTCCTTGCACTCACTGACAAAGACGTTTTGGGTEST: gi|116483054|gb|EG525646.1|EG525646
genomic: ATCTCCAATGCTTCTGATgtaagcagct ... tgattttcagGCCTTGGACAAAATTAGGTTCCTTGCACTCACTGACAAAGACGTTTTGGGT
EST: ACAGTAACAAGGACATTTTCTTAAGAGAGTTGATCTCCAATGCTTCTGAT GCCTTGGACAAAATTAGGTTCCTTGCACTCACTGACAAAGACGTTTTGGGTEST: gi|164057380|gb|ES146766.1|ES146766
genomic: ACAGTAACAAGGACATTTTCTTAAGAGAGTTGATCTCCAATGCTTCTGATgtaagcagct ... tgattttcagGCCTTGGACAAAATTAGGTTCCTTGCACTCACTGACAAAGACGTTTTGGGT
EST: CCAATGCTTCTGAT GCCTTGGACAAAATTAGGTTCCTTGCACTCACTGACAAAGACGTTTTGGGTEST: gi|164163024|gb|ES085608.1|ES085608
genomic: CCAATGCTTCTGATgtaagcagct ... tgattttcagGCCTTGGACAAAATTAGGTTCCTTGCACTCACTGACAAAGACGTTTTGGGT
EST: TTAAGAGAGTTGATCTCCAATGCTTCTGAT GCCTTGGACAAAATTAGGTTCCTTGCACEST: gi|86067432|gb|DR363189.1|DR363189
genomic: TTAAGAGAGTTGATCTCCAATGCTTCTGATgtaagcagct ... tgattttcagGCCTTGGACAAAATTAGGTTCCTTGCAC
EST: AGTTGATCTCCAATGCTTCTGAT GCCTTGGACAAAATTAGGTTCCTTGCACTCACTGACAAAGACGTTTTGGGT
genomic: AGTTGATCTCCAATGCTTCTGATgtaagcagct ... tgattttcagGCCTTGGACAAAATTAGGTTCCTTGCACTCACTGACAAAGACGTTTTGGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCCAAGCTGAGGTTTCTCGGCTTATGGACATTATTATCAACTCTCTATACAGTAACAAGGACATTTTCTTAAGAGAGTTGATCTCCAATGCTTCTGATgtaagcagcttcgtgtacattgttttagtgagtttttgggatacctcgttaaataggggaactaataagtgtctgtgttggtgattttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA